Job Description Q9TYT3 Confidence 99.94% Date Sat Apr 13 13:01:24 BST 2013 Rank 25 Aligned Residues 118 % Identity 22% Template c2dyqA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family b member PDBTitle: crystal structure of the c-terminal phophotyrosine interaction domain2 of human apbb3 Resolution 3.10 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.
Predicted Secondary structure																																																																							.									.	.
Query SS confidence																																																																							.									.	.
Query Sequence		L	S	A	T	Y	L	G	S	V	P	V	V	E	S	I	N	V	M	V	S	E	M	R	V	Q	V	V	S	E	C	I	Q	H	V	A	A	T	V	G	V	T	A	A	R	E	I	N	P	V	V	S	R	V	I	G	E	V	K	K	E	N	F	P	V	D	I	N	I	S	.	S	K	M	I	K	I	I	K	.	.
Query Conservation																																																																							.									.	.
Alig confidence																		.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.									.	.
Template Conservation																		.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	A	L	Y	X	G	T	L	P	V	T	K	A	X	G	.	.	.	.	.	.	.	X	D	V	L	N	E	A	I	G	T	L	T	A	R	G	D	R	N	A	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	T	X	L	S	V	S	D	S	L	X	T	A	H	P	I
Template Known Secondary structure													S	S	S			.	.	.	.	.	.	.																S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.								.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.																					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	R	L	I	Q	R	H	P	F	S	F	F	S	F	G	A	Q	G	Q	K	G	T	D	T	E	L	M	F	G	Y	I	A	K	N	K	D	G	T	D	R	R	C	H	V	V	F	I	E	D	V	H	K	L	I	D	V	L	T	T	A	I	N	V	N	T	F	D	A	Q	A	N	A	S	T	S	N
Query Conservation
Alig confidence																								.	.	.	.												.														.	.	.										.
Template Conservation																								.	.	.	.												.														.	.	.										.
Template Sequence		Q	E	E	P	L	W	Q	C	P	V	R	L	V	T	F	I	G	V	G	R	D	P	.	.	.	.	H	T	F	G	L	I	A	D	L	G	R	.	Q	S	F	Q	C	A	A	F	W	C	Q	P	H	.	.	.	A	G	G	L	S	E	A	V	Q	.	A	A	C	X	V	Q	Y	Q	K	C	L	V	A
Template Known Secondary structure						S	S				G	G	G								S	S	T	.	.	.	.	T									S	S	.	S										S	S		.	.	.	T									.
Template Predicted Secondary structure																								.	.	.	.												.														.	.	.										.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.					.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.				390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D