Job Description Q9U2Z5 Confidence 99.84% Date Fri May 3 21:23:33 BST 2013 Rank 46 Aligned Residues 184 % Identity 14% Template c3jxiA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain Resolution 2.30 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.								.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																			70	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	K	V	Y	R	A	L	Y	D	F	Q	A	R	S	A	Q	E	L	T	.	.	.	.	.	.	.	F	S	E	G	D	L	M	Y	V	S	D	E	Q	P	N	K	D	W	F	Q	A	S	I	G	G	K	K	G	L	V	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	V
Query Conservation																						.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	I	L	F	D	I	V	S	R	G	S	P	D	G	L	E	G	L	L	S	F	L	L	T	H	K	K	R	L	T	D	E	E	F	R	E	P	S	T	G	K	T	C	L	P	K	A	L	L	N	L	S	A	G	R	N	D	T	I	P	I	L	L	D	I	A	E	K	T	G	N	M	R	E	F	I	N	S	P
Template Known Secondary structure												T		G	G	G	G	T	T									T			T	T	S	G	G	G	S		T	T	T										T	S		B	T	T	B		T												T	T							T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.															.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		I	S	E	N	V	E	E	L	P	N	P	L	H	E	A	A	R	R	G	N	M	D	M	L	A	E	C	L	R	E	R	V	S	V	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	K	S	G	A	T	P	L	Y	W	A	S	H	G	G	H	A	P	A	V	D	T	L	L	K	D	P	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		F	R	D	V	Y	Y	R	G	Q	T	A	L	H	I	A	I	E	R	R	C	K	H	Y	V	E	L	L	V	E	K	G	A	D	V	H	A	Q	A	R	G	R	F	F	Q	P	K	D	E	G	G	Y	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	P	H	I	V	H	Y	L	T	E	N	G	H	K
Template Known Secondary structure		B			S	S			S	B									T	T											T	T			T	T									S	S	S					S			S		S	S								T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
																		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	A	V	S	V	Q	N	K	L	G	D	T	P	L	H	A	A	A	Y	K	G	H	V	E	C	V	R	L	L	L	A	S	S	A	N	P	F	V	R	N	Q	D	Q	K	L	P	S	D	V	T	K	D	A	D	I	A	A	L	L	D	K	A	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	D	L	R	R	Q	D	S	R	G	N	T	V	L	H	A	L	V	A	I	A	D	N	T	R	E	N	T	K	F	V	T	K	M	Y	D	L	L	L	I	K	C	A	K	L	F	P	D	T	N	L	E	A	L	L	N	N	D	G	L	S	P	L	M	M	A	A	K	T	G	K	I	G	I	F	Q	H	I	I
Template Known Secondary structure					T	T				T	T	S													S	S																							T	T			G	G	G				T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		201
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		377

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D