Job Description Q9U2Z5 Confidence 99.85% Date Fri May 3 21:23:33 BST 2013 Rank 43 Aligned Residues 138 % Identity 24% Template c1oy3D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex Resolution 2.05 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																				.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	S	E	N	V	E	E	L	P	N	P	L	H	E	A	A	R	R	G	N	M	D	M	L	A	E	C	L	R	E	R	V	S	.	.	.	V	N	S	L	D	K	S	G	A	T	P	L	Y	W	A	S	H	G	G	H	A	P	A	V	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	G	Y	V	T	E	D	G	D	T	A	L	H	L	A	V	I	H	Q	H	E	P	F	L	D	F	L	L	G	F	S	A	G	H	E	Y	L	D	L	Q	N	D	L	G	Q	T	A	L	H	L	A	A	I	L	G	E	A	S	T	V	E	K	L	Y	A	A	G	A	G	V	L	V	A	E	R	G	G	H	T
Template Known Secondary structure								T	T											T	T													T	T	S	G	G	G	G				T	T	S											T											T	T			S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
																																																															132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	K	D	P	K	V	A	V	S	V	Q	N	K	L	G	D	T	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	H	L	A	C	R	V	R	A	H	T	C	A	C	V	L	L	Q	P	R	P	S	H	P	R	D	A	D	E	D	W	R	L	Q	L	E	A	E	N	Y	D	G	H	T	P	L	H	V	A	V	I	H	K	D	A	E	M	V	R	L	L	R	D	A	G	A	D	L	N	K	P	E	P	T	C	G	R	T	P
Template Known Secondary structure							T	T	T	T									S	S	S			S	S								G	G	G	G	T	T				T	T	S										T	T												T			T	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	A	A	A	Y	K	G	H	V	E	C	V	R	L	L	L	A	S	S	A	N	P	F	V	R	N	Q	D	Q	K	L	P	S	D	V	T	K	D	A	D	I	A	A	L	L	D	K	A	M	K	E	D	R	V	N	E	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	L	A	V	E	A	Q	A	A	S	V	L	E	L	L	L	K	A	G	A	D	P	T	A	R	M	Y	G	G	R	T	P	L	G	S	A	L	L	R	P	N	P	I	L	A	R	L	L	R	A	H	G	A	P	E	P	E	D
Template Known Secondary structure								T	T											T	T			T	T				T	T	S									T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D