Phyre 2 alignment of Q9TXI2 with c3mi9A

Job Description Q9TXI2
Confidence 100.00% Date Sat Apr 13 13:08:07 BST 2013

Rank 237 Aligned Residues 283

% Identity 22% Template c3mi9A_

PDB info PDB header:protein binding Chain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Q	V	E	L	T	K	K	L	G	E	G	A	F	G	E	V	W	K	G	K	L	T	L	K	N	G	N	V	E	N	C	A	I	K	T	A	K	L	E	S	L	N	K	E	Q	I	K	E	I	M	R	E	A	R	L	M	R	N	L	D	H	P	N	V	V	K	F	Y	G	V	G	A	S	Q	E	P	L	Y	V
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence	S	K	Y	E	K	L	A	K	I	G	Q	G	T	F	G	E	V	F	K	A	R	H	R	.	.	.	K	T	G	Q	K	V	A	L	K	K	V	L	M	E	N	E	K	E	G	F	P	I	T	A	L	R	E	I	K	I	L	Q	L	L	K	H	E	N	V	V	N	L	I	E	I	C	R	T	K	G	S	I	Y	L
Template Known Secondary structure	G	G								S	S		S	T	T	S							T	.	.	.	T	T												S	S		S	S	S	S																	T	T	B
Template Predicted Secondary structure																								.	.	.
Template SS confidence
	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.

	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.
Predicted Secondary structure																																																							.																			.	.	.	.
Query SS confidence																																																							.																			.	.	.	.
Query Sequence	I	M	E	L	A	D	C	G	A	L	D	S	Y	L	Q	K	N	P	N	L	V	P	D	K	K	M	E	M	I	Y	Q	A	A	C	G	I	S	Y	M	H	E	K	K	L	L	H	R	D	I	A	A	R	N	C	.	L	Y	G	G	G	Q	V	K	I	A	D	F	G	L	S	R	E	G	.	.	.	.	I	S	Y
Query Conservation																																																							.																			.	.	.	.
Alig confidence																																																							.																			.	.	.	.
Template Conservation
Template Sequence	V	F	D	F	C	E	H	D	L	A	G	L	L	S	N	V	L	V	K	F	T	L	S	E	I	K	R	V	M	Q	M	L	L	N	G	L	Y	Y	I	H	R	N	K	I	L	H	R	D	M	K	A	A	N	V	L	I	T	R	D	G	V	L	K	L	A	D	F	G	L	A	R	A	F	S	L	A	K	N	S	Q
Template Known Secondary structure						S										T	T	S																								T	T							S	G	G	G					T	T	S								T	T								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																							.																																																				.	.	.	.	.	.
Query SS confidence																							.																																																				.	.	.	.	.	.
Query Sequence	V	M	D	L	T	K	K	V	P	I	R	W	L	A	P	E	T	L	K	A	G	I	.	Y	S	P	K	T	D	V	F	A	F	G	I	M	A	W	E	I	T	E	N	G	K	E	P	Y	P	D	M	R	V	A	D	V	V	G	K	V	R	N	G	Y	R	M	R	F	D	P	V	F	V	D	.	.	.	.	.	.
Query Conservation																							.																																																				.	.	.	.	.	.
Alig confidence																							.																				.																																.	.	.	.	.	.
Template Conservation																																											.
Template Sequence	P	N	R	Y	N	R	V	V	T	L	W	Y	R	P	P	E	L	L	L	G	E	R	D	Y	G	P	P	I	D	L	W	G	A	G	C	I	M	A	E	M	W	T	.	R	S	P	I	M	Q	G	N	T	E	Q	H	Q	L	A	L	I	S	Q	L	C	G	S	I	T	P	E	V	W	P	N	V	D	N	Y	E	L
Template Known Secondary structure								S		G	G	G							T	T			S			T																	.	S	S		S				S	S																	T	T	T	S	T	T	G	G	G		G	G
Template Predicted Secondary structure																																											.
Template SS confidence
	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

																								346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	F	G	D	Y	V	T	K	H	C	W	A	E	N	P	A	D	R	V	S	M	A	D	V	L	R	Y	L	Q	T	T	F	G	M	K	P	V	V	L	.	S	I	L	S	S	N	R	S	T	E	E	E	M	K	T	M
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.											.
Template Conservation																																																				.	.
Template Sequence	Y	E	K	L	E	L	V	K	G	Q	K	R	K	V	K	D	R	L	K	A	Y	V	R	D	P	Y	A	L	D	L	I	D	K	L	L	V	L	D	P	A	Q	R	I	D	S	D	D	A	L	N	H	.	.	D	F	F	W	S	D	P	M	P	S	D	L	K	G	M	L	S	T	H	L	T	S	M	F	E	Y	L
Template Known Secondary structure	G	T	S	S				S	S																										S		S	S	G	G	G	S								T	S	.	.	G	G	G	G	S	S	S					S						S	S		S	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

	402	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	P	P	M	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	P	P	R	R
Template Known Secondary structure	S		S
Template Predicted Secondary structure
Template SS confidence
	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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Phyre2 is part of Genome3D