Job Description P0A084 Confidence 22.52% Date Tue Jul 17 17:05:04 BST 2012 Rank 55 Aligned Residues 67 % Identity 7% Template c3md1B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1) Resolution 1.60 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	F	S	Y	N	K	L	L	E	I	F	F	S	V	I	D	P	L	D	T	G	G	Q	Y	Q	D	R	G	P	Q	Y	Q	T	A	I	F	Y	T	N	D	H	Q	K	E	L	A	E	T	Y	I	E	Q	L	K	N	T	I	N	A	D	K	A	I	A	T	K
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		N	V	N	V	D	D	E	T	L	R	N	.	A	F	K	D	F	P	S	Y	L	S	G	H	V	M	W	D	M	Q	T	G	S	S	R	G	Y	G	F	V	S	F	T	S	Q	D	D	A	Q	N	A	M	D	S	M	Q	G	Q	D	L	N	G	R	P	L	R	I	N
Template Known Secondary structure			T	T									.			T	T	S	T	T										T	T	T												S													T	T				T	T
Template Predicted Secondary structure													.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions