Job Description P0A084 Confidence 10.02% Date Tue Jul 17 17:05:04 BST 2012 Rank 79 Aligned Residues 75 % Identity 9% Template c2dnmA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:srp46 splicing factor; PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor Resolution UNK

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	E	I	Q	Y	D	V	A	L	F	S	Y	N	K	L	L	E	I	F	F	S	V	I	D	P	L	D	T	G	G	Q	Y	Q	D	R	G	P	Q	Y	Q	T	A	I	F	Y	T	N	D	H	Q	K	E	L	A	E	T	Y	I	E	Q	L	K	N	T	I	N	A	D	K	A	I	A	T	K	I
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		T	L	K	V	D	N	L	T	Y	R	T	S	P	D	S	L	.	R	R	V	F	E	K	Y	G	R	V	G	D	V	Y	I	P	R	E	P	H	T	K	A	P	R	G	F	A	F	V	R	F	H	D	R	R	D	A	Q	D	A	E	A	A	M	D	G	A	E	L	D	G	R	E	L	R	V	Q	V
Template Known Secondary structure							S			T	T							.					T	T	T	S									B		S	S	S		S	B		S							S	S	S	S										S	S			B	T	T	B
Template Predicted Secondary structure																		.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions