Job Description O07325 Confidence 99.94% Date Tue Jul 17 17:05:02 BST 2012 Rank 18 Aligned Residues 311 % Identity 12% Template c4apwH_ PDB info PDB header:structural protein Chain: H: PDB Molecule:alp12; PDBTitle: alp12 filament structure Resolution 19.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	H	Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	L	K	L	P	I	I
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	E	Y	V	M	T	L	D	A	G	K	Y	E	T	K	L	I	G	K	N	K	K	G	T	T	E	D	I	K	R	V	I	F	K	T	K	I	Y	N	L	E	D	G	Y	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	G	N	S	H	K	I	E	L	D	G	K
Template Known Secondary structure													S	S															S	S	T	T					S							T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S							S	S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																					.	.	.	.	.	.	.	.	60	.	.	.	.
		82			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		G	.	.	T	E	V	Y	D	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E	V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A
Query Conservation			.	.
Alig confidence			.	.																																																																							.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		E	Y	L	I	G	E	Q	G	V	E	D	S	S	E	T	S	K	T	N	L	I	H	K	L	A	A	Y	T	A	I	T	Q	V	L	D	S	N	K	N	N	K	V	Q	L	V	L	A	C	P	L	S	V	L	R	N	A	K	A	K	E	E	Y	R	D	Y	I	K	G	N	G	E	I	T	.	.	.	.	.	.	.
Template Known Secondary structure						S			S	S	S		S	G	G	G				T	T												T	T			S	S	S												G	G	G	T	T	S	S	T	T	T	T							S	S						.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																							.	.																												.	.
Query SS confidence																																							.	.																												.	.
Query Sequence		I	Q	K	S	I	L	I	N	M	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	L	T	A	T	.	.	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R	G	E	L	V	.	.	D	A	D	S	I	E	M	A	G	R	D	I
Query Conservation																																							.	.																												.	.
Alig confidence		.	.	.	.	.	.	.	.																														.	.																												.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	V	K	V	D	D	K	E	Y	S	F	E	I	T	D	I	T	I	K	A	E	G	S	G	V	L	F	L	E	Q	E	N	F	K	N	K	N	V	A	V	I	D	F	G	G	L	N	M	G	F	S	L	Y	R	N	C	V	V	N	P	S	E	R	F	I	E	E	H	G	V	K	D	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S	T	T																								S					T	T										S	S									T	T				G	G	G					S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	D	D	I	A	Q	G	L	N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	Q	Y	T	Q	K	D	L	S	D	F	I	E	A	R	V	E	E	I	F	F	E	V	F	D	V	L	Q	D	L	G	L	T	.
Query Conservation																																																																																	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	R	V	G	D	A	L	T	D	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	N	L	I	T	N	E	Q	A	E	S	A	L	N	N	G	Y	M	K	K	G	G	E	I	D	T	E	S	S	T	V	I	K	K	V	K	E	K	F	L	K	D	A	I	K	L	I	E	K	R	G	F	K	L
Template Known Secondary structure							T	S	S	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S		T	T	S		T	T	T	T		S	S	S		S	S					T	T			S	T	T																						T			T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.														.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	T	I	S	S	S
Query Conservation
Alig confidence																	.	.																.	.	.	.	.	.	.
Template Conservation																	.	.																.	.	.	.	.	.	.
Template Sequence		D	Q	L	D	S	L	I	F	I	G	G	T	T	Q	K	.	.	L	K	E	Q	I	S	K	T	Y	P	N	N	S	I	I	.	.	.	.	.	.	.	T	N	N	S	Q	W	T	T	C	E	G	L	Y	K	V	A
Template Known Secondary structure		T	S		S						S	T	T				.	.									S	T	T					.	.	.	.	.	.	.		S	S	G	G	G
Template Predicted Secondary structure																	.	.																.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.								.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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