Job Description O07325 Confidence 97.78% Date Tue Jul 17 17:05:02 BST 2012 Rank 74 Aligned Residues 283 % Identity 12% Template c3r8eA_ PDB info PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution Resolution 1.65 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	L	K	L	P	I	I	G	T	E
Query Conservation
Alig confidence																				.																	.	.	.	.	.	.	.																							.													.	.	.
Template Conservation																				.																	.	.	.	.	.	.	.																							.													.	.	.
Template Sequence		X	I	L	G	I	D	V	G	G	T	S	V	K	F	G	L	V	T	.	P	E	G	E	I	Q	N	A	T	R	F	X	T	A	D	W	.	.	.	.	.	.	.	V	N	G	I	G	F	V	E	S	X	K	L	E	I	G	N	F	L	K	Q	Y	P	.	I	V	K	G	V	G	I	G	W	P	G	L	.	.	.
Template Known Secondary structure										S	S									.	T	T															.	.	.	.	.	.	.		T	T	T																		T	.	T									S	S		.	.	.
Template Predicted Secondary structure																				.																	.	.	.	.	.	.	.																							.													.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.								.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	D	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E	V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K	S	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	L	D	R	T	K	V	I	L	L	P	N	I	P	S	V	V	N	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S						B	T	T	B					S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																.															.	.	.
Query SS confidence																.															.	.	.
Query Sequence		L	I	N	M	I	K	C	V	E	A	C	G	V	D	.	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	.	.	.	L	T	A	T	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R	G	E	L	V	D	A	D	S	I	E	M	A	G	R	D	I	T	D	D	I	A
Query Conservation																.															.	.	.
Alig confidence		.	.	.												.															.	.	.																			.																					.	.	.	.	.	.	.
Template Conservation		.	.	.																																																.																					.	.	.	.	.	.	.
Template Sequence		.	.	.	I	V	E	I	L	R	S	E	F	P	H	I	H	F	K	I	E	N	D	A	K	C	A	A	L	G	E	Y	Y	F	G	E	N	K	R	X	Q	T	F	I	L	L	A	L	G	T	G	.	V	G	S	G	V	X	X	N	G	K	L	F	I	G	G	R	G	N	G	T	.	.	.	.	.	.	.	E	V
Template Known Secondary structure		.	.	.										T	T	S																			S	T	T	T	T		S	S							S	S	S	.								T	T						T	T	S				.	.	.	.	.	.	.		G
Template Predicted Secondary structure		.	.	.																																																.																					.	.	.	.	.	.	.
Template SS confidence
					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.								.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.
Query Sequence		Q	G	L	N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	Q	Y	T	Q	K	D	L	S	D	F	I	.	.	.	.	.	.	.	E	A	R	V	E	E	I	F	F	E	V	F	D	V	L	Q	D	L	G	L
Query Conservation																																																							.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	H	X	L	T	T	R	G	K	S	L	E	N	Q	V	G	I	N	H	L	I	A	Y	T	H	E	Q	L	A	L	D	V	A	K	K	S	S	L	H	T	I	A	E	L	S	P	K	V	I	A	D	H	A	A	Q	G	D	A	L	A	L	A	V	W	A	D	I	G	T	I	I	G	E	S	L	V	N	I	V	R
Template Known Secondary structure		G	G		B		T	T	S	S	B	S					S																T	T				S	G	G	G		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		T	K	V	N	G	G	F	I	V	T	G	G	S	A	N	.	.	.	.	.	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	T	I	S	S	S	I
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.													.
Template Conservation																																		.
Template Sequence		V	X	D	L	N	N	I	L	L	G	G	G	I	S	G	A	F	D	Y	F	V	P	N	L	K	K	A	X	L	E	H	L	.	P	T	Y	Y	T	D	D	X	Y	I	G	K	A	T	L	E	N	D	A	G	L	L	G	A	A	G	L	I	X
Template Known Secondary structure												S	G	G	G	G	G																S	.						T	T							S	S	G	G	G
Template Predicted Secondary structure																																		.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions