Job Description O07325 Confidence 99.79% Date Tue Jul 17 17:05:02 BST 2012 Rank 26 Aligned Residues 287 % Identity 18% Template c3js6A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein Resolution 1.95 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	H	Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	L	K	L	P	I	I
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	V	Y	V	X	A	L	D	F	G	N	G	F	V	K	G	K	I	N	D	E	K	F	V	I	P	S	R	I	G	R	K	T	N	E	N	N	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	F	V	D	N	K	L	D	V	S	E	F	I	I	N	G	N
Template Known Secondary structure													S	S							T	T							S							S	S			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S					S							T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		82	.	.	.	.										.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query Sequence		G	T	E	V	Y	.	.	.	.	.	.	.	.	.	D	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	.	.	.	.	.	.	T	E	V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I
Query Conservation							.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.													.
Template Conservation																																																																				.
Template Sequence		N	D	E	V	L	L	F	G	N	D	L	D	K	T	T	N	T	G	K	D	T	A	S	T	N	D	R	Y	D	I	K	S	F	K	D	L	V	E	C	S	I	G	L	L	A	R	E	V	P	E	E	V	V	N	V	V	I	A	T	G	X	P	S	N	E	I	.	G	T	D	K	Q	A	K	F	E	K	L	L	N
Template Known Secondary structure		T	T						S	T	T						S								S	T	T	G	G	G	S																T	T	S		S	S												G	G	G	T	.	T	S											S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.								.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K	S	I	L	I	N	M	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	L	T	.	.	.	.	.	.	.	A	T	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	R	L	I	E	I	D	G	I	A	K	T	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	G	V	K	I	V	A	Q	P	X	G	T	L	L	D	L	N	X	E	N	G	K	V	F	K	A	F	T	E	G	K	Y	S	V	L	D	F	G	S	G	T	T	I	I	D	T	Y	Q	N
Template Known Secondary structure		S							T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T			T	T								T										S	S									T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.																.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		G	E	L	V	D	.	.	A	D	S	I	E	M	A	G	R	D	I	T	D	D	I	A	Q	G	L	N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	Q	Y	T	Q	K	D	L	S	D	F	I	E	A	R	V
Query Conservation							.	.
Alig confidence							.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	K	R	V	E	E	E	S	F	V	I	N	K	G	T	I	D	F	Y	K	R	I	A	S	H	V	S	T	P	R	M	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	L	E	F	K	D	E	F	Y	K	E	Q
Template Known Secondary structure		T				G	G	G					S														T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																																			.	.	.	240	.	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		E	E	I	F	F	E	V	F	D	V	L	Q	D	L	G	L	T	.	K	V	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	T	I	S	S	S
Query Conservation																			.
Alig confidence																			.																.	.																.	.	.	.	.	.	.
Template Conservation																																			.	.																.	.	.	.	.	.	.
Template Sequence		D	S	L	I	E	E	V	X	S	N	F	E	I	T	V	G	N	I	N	S	I	D	R	I	I	V	T	G	G	G	A	N	I	.	.	H	F	D	S	L	S	H	Y	Y	S	D	V	F	E	K	.	.	.	.	.	.	.	A	D	D	S	Q	F	S	N	V	R	G	Y	E	K	L	G
Template Known Secondary structure																T			T	T	S		S						S	T	T				.	.									S	S	S					.	.	.	.	.	.	.		S	S	G	G	G
Template Predicted Secondary structure																																			.	.																.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.								.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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