Job Description O07325 Confidence 99.44% Date Tue Jul 17 17:05:02 BST 2012 Rank 34 Aligned Residues 361 % Identity 10% Template c3gg4B_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		M	E	E	H	Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	.	L	K	L	P
Query Conservation																																																																													.
Alig confidence					.																																																																								.
Template Conservation					.
Template Sequence		L	A	S	.	Y	F	I	G	V	D	V	G	T	G	S	A	R	A	G	V	F	D	L	Q	G	R	X	V	G	Q	A	S	R	E	I	T	X	F	K	P	K	A	D	F	V	E	Q	S	S	E	N	I	W	Q	A	V	C	N	A	V	R	D	A	V	N	Q	A	D	I	N	P	I	Q	V	K	G	L	G	F	D
Template Known Secondary structure					.									S	S									T	T														B		S	S	T	T																									T			G	G	G
Template Predicted Secondary structure					.
Template SS confidence
		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																																						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	G	T	E	V	Y	D	E	S	N	E	I	D	F	Y	E	D	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	C	S	L	V	V	L	D	K	E	G	N	P	L	T	V	S	P	S	G	R	N	E	Q	N	V	I	V	W	X	D	H	R	A	I	T	Q	A	E	R	I	N	A	T	K	H	P	V	L	E	F	V	G	G	V	I	S	P	E	X	Q	T	P	K	L	L	W	L	K	Q	H	X	P	N	T	W	S	N	V
Template Known Secondary structure				S							T	T	S		B				S	T	T			T	T						T	T			T	T											T		G	G	G	G	G	G	T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																														.	170	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K	S	I	L	I	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	C	V	E
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	H	L	F	D	L	P	D	F	L	T	W	R	A	T	K	D	E	T	R	S	L	C	S	T	V	C	K	W	T	Y	L	G	H	E	D	R	W	D	P	S	Y	F	K	L	V	G	L	A	D	L	L	D	N	N	A	A	K	I	G	A	T	V	K	P	X	G	A	P	L	G	H	G	L	S	Q	R	A	A	S
Template Known Secondary structure																	S													S			B	T	T	T	T	B										T		G	G	G	G					T	T	T		S					T	T		B		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	.	.	N	Y	G	S	I	L	T	A	T	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	E	L	V	D	A	D	S	I	E	M	A	G	R	D
Query Conservation																.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	X	G	L	I	P	G	T	A	V	S	V	S	I	I	D	A	H	A	G	T	I	G	I	L	G	A	S	D	R	R	I	A	L	I	G	G	T	S	T	A	H	X	A	X	S	R	S	A	H	F	I	S	G	I	W	G	P	Y	Y	S	A	I	L	P	E	Y	W	L	N	E	G	G	Q	S	A	T	G	A	L
Template Known Secondary structure				T			T	T				B														T	T											S	S	S								S	S					T	T	S						T	S	S	S	T	T									S		S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.															250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	D	D	I	A	Q	G	L	N	T	S	Y	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	Q	Y	T
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	H	I	I	Q	S	H	P	C	Y	P	A	L	L	E	Q	A	K	N	K	G	E	T	I	Y	E	A	L	N	Y	I	L	R	Q	X	A	G	E	P	E	N	I	A	F	L	T	N	D	I	H	X	L	P	Y	F	H	G	N	R	S	P	R	A	N	P	N	L	T	G	I	I	T	G	L	K	L	S	T	T
Template Known Secondary structure									S	T	T											T	T																S	S	G	G	G	S	G	G	G	G	T	T							T	T		B		T	T	T		B	T	T										S			S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		Q	K	D	L	S	D	F	I	E	A	R	V	E	E	I	F	F	E	V	F	D	V	L	Q	D	L	G	L	T	.	K	V	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S
Query Conservation																															.
Alig confidence																															.																																		.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.
Template Sequence		P	E	D	X	A	L	R	Y	L	A	T	I	Q	A	L	A	L	G	T	R	H	I	I	E	T	X	N	Q	N	G	Y	N	I	D	T	X	X	A	S	G	G	G	T	K	N	P	I	F	V	Q	E	H	A	N	A	T	G	C	A	X	L	L	P	.	.	.	.	.	.	.	.	E	E	S	E	A	X	L	L	G
Template Known Secondary structure																													T	T	T											T	T	T	T													T	S						.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.									.	.	.	.	.	.	.	.	480
		365	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	S	S	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	X	X	G	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.