Job Description O07325 Confidence 96.83% Date Tue Jul 17 17:05:02 BST 2012 Rank 91 Aligned Residues 313 % Identity 15% Template c3cqyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	H	Y	Y	V	S	I	D	I	G	S	S	S	.	.	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S
Query Conservation																.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	A	Y	Y	I	G	L	X	S	G	T	S	X	D	G	V	D	A	V	L	V	D	F	A	G	E	Q	P	Q	L	I	G	T	H	T	E	T	I	P	T	H	L	L	K	G	L	Q	R	L	C	L	P	G	T	D	E	I	N	R	L	G	R	L	D	R	S	V	G	K	L	F	A	L	A	V	N	N	L	L
Template Known Secondary structure		T											T	T												S	S	S	S																					G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		65	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure												.														.	.	.
Query SS confidence												.														.	.	.
Query Sequence		I	A	S	G	V	D	I	K	E	V	.	F	L	K	L	P	I	I	G	T	E	V	Y	D	.	.	.	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E	V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S
Query Conservation												.														.	.	.
Alig confidence												.														.	.	.														.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	T	K	I	A	K	D	E	I	I	A	I	G	S	H	G	Q	T	V	R	H	X	P	N	L	E	V	G	F	T	L	Q	I	G	D	P	N	T	I	.	.	.	.	.	.	.	.	.	.	.	A	T	E	T	G	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	D	F	R	R	K	D
Template Known Secondary structure								G	G	G															T	T	S	S	S							S						.	.	.	.	.	.	.	.	.	.	.					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.														.	130	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																						.																										.
Query SS confidence																																																						.																										.
Query Sequence		D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K	S	I	L	I	N	M	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	.	L	T	A	T	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	.	E
Query Conservation																																																						.																										.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.																	.									.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		I	A	L	G	G	Q	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	P	A	F	H	Q	Q	T	F	A	Q	V	G	K	K	R	V	I	L	N	I	G	.	G	I	A	N	I	T	Y	L	P	G
Template Known Secondary structure				T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T									S	.	S									S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		138	.	140	.	.	.	.	.																																						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250											.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Query Sequence		R	G	E	L	V	D	A	D	S	I	E	M	A	G	R	D	I	T	D	D	I	A	Q	G	L	N	T	S	Y	E	T	A	.	.	.	.	.	.	.	.	.	.	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	.	.	.	.	Q	Y
Query Conservation																																		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation
Template Sequence		N	S	E	E	V	L	G	F	D	T	G	P	G	N	T	L	I	D	A	W	V	Q	Q	V	K	N	E	S	Y	D	K	N	G	A	W	A	A	S	G	K	T	D	P	Q	L	L	A	Q	L	L	S	H	P	Y	F	S	L	A	Y	P	K	S	T	G	R	E	L	F	N	Q	A	W	L	E	Q	Q	L	S	A	F
Template Known Secondary structure		S	S	S										S	S														S	S		G	G	G						S												T		G	G	G	G	S		S	S					S	S	S	S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		T	Q	K	D	L	S	D	F	I	E	A	R	V	E	E	I	F	F	E	V	F	D	V	L	Q	D	L	G	L	T	K	V	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	.	K	P	E	F	S	S	A	I
Query Conservation																																																																									.
Alig confidence																														.	.	.																											.														.
Template Conservation																														.	.	.																											.
Template Sequence		N	Q	L	N	E	E	D	I	Q	S	T	L	L	D	L	T	C	H	S	I	A	Q	D	I	L	K	L	A	.	.	.	Q	E	G	E	L	F	V	C	G	G	G	A	F	N	A	E	L	X	Q	R	L	A	A	L	L	P	.	G	Y	R	I	D	T	T	S	A	L	G	V	D	P	K	W	A	E	G	I	A	F
Template Known Secondary structure		T	T	S																										.	.	.	S	S							S	G	G	G	G													T	.	T						G	G	G	G	T			T	T	T
Template Predicted Secondary structure																														.	.	.																											.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	I	S	S	S	I	A	F	D	E	L	L	D	Y	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	W	L	A	X	R	Y	Q	L	G	L	P	A	N	L	P	A
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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