Job Description O07325 Confidence 93.72% Date Tue Jul 17 17:05:02 BST 2012 Rank 109 Aligned Residues 299 % Identity 13% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	.	.	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	L	K	L	P	I	I	G
Query Conservation																																																		.	.
Alig confidence																						.	.	.	.																									.	.																											.	.	.	.
Template Conservation																						.	.	.	.																																																					.	.	.	.
Template Sequence		L	A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	E	D	.	.	.	.	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	.	.	.	.
Template Known Secondary structure									S	S	S									S	S	.	.	.	.													S	S		S																										T			T	T	T						.	.	.	.
Template Predicted Secondary structure																						.	.	.	.																																																					.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	V	Y	D	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E	V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	Q	G	P	G	L	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																											74	.	.	.	.	.	80	.	.																												.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		S	I	L	I	N	M	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	L	T	A	T	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R	G	E	L	V	D	A	.	D	S	I	E	M	A	G	R	D	I	T	D	D	I	A	Q
Query Conservation																																																																	.
Alig confidence																																														.	.																		.
Template Conservation																																														.	.
Template Sequence		V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	F	G	V	K	D	P	V	G	L	Y	V	S	.	.	G	G	N	T	Q	V	L	A	L	E	G	G	R	Y	R	V	F	G	E	T	L	D	I	G	I	G	N	A	I	D	V	F	A	R
Template Known Secondary structure														T	T															G	G	G	G	G	T			S								.	.	S	S									T	T								B	S	S	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.															.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		G	L	N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	Q	K	D	L	S	D	F	I	E	A	R	V	E	E	.	I	F	F	E	V	F	D
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																					.	.	.	.	.
Template Sequence		E	L	G	L	G	F	P	G	G	P	K	V	E	K	L	A	E	K	G	.	.	.	.	.	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R
Template Known Secondary structure			T	T			S	S											T		.	.	.	.	.		S										T	T																	T			S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																				.	.	.																									.
Query SS confidence																																				.	.	.																									.
Query Sequence		V	L	Q	D	L	G	L	T	K	V	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	.	.	.	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	.	T	I	S	S	S	I	A	F	D	E	L	L	D	Y	V	T	I	N
Query Conservation																																				.	.	.																									.
Alig confidence											.	.	.	.																						.	.	.																.	.	.	.						.
Template Conservation											.	.	.	.																																								.	.	.	.
Template Sequence		A	V	A	H	T	E	K	D	E	.	.	.	.	V	V	L	V	G	G	V	A	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F	F	V	P	P	Y	D	L	C	R	D	N	.	.	.	.	G	A	M	I	A	Y	T	G	L	R	M	Y	K	A	G	I	S	F	R	L	E	E	T	I
Template Known Secondary structure									S		.	.	.	.					S	G	G	G	G																T								G	G	G	T	S	S		.	.	.	.	S													T	T					G	G	G	G
Template Predicted Secondary structure											.	.	.	.																																								.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		383	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	D	N	E	E	T	E	E	D	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	Q	K	F	R	T	D	E	V	E	I
Template Known Secondary structure				T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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