Job Description O07325 Confidence 99.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 54 Aligned Residues 346 % Identity 13% Template c2dpnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 Resolution 2.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																													.																						.	.	.
Query SS confidence																																													.																						.	.	.
Query Sequence		Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	.	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	.	.	.	V	D	I	K	E	V	F	L	K	L	P	I
Query Conservation																																													.																						.	.	.
Alig confidence																				.																									.																						.	.	.
Template Conservation																				.
Template Sequence		F	L	L	A	L	D	Q	G	T	T	S	S	R	A	I	L	F	T	.	L	E	G	R	P	V	A	V	A	K	R	E	F	R	Q	L	Y	P	K	P	G	W	V	E	H	D	P	L	E	I	W	E	T	T	L	W	A	A	R	E	V	L	R	R	A	G	A	E	A	G	E	V	L	A	L	G	I	T	N	Q	R
Template Known Secondary structure										S	S									.	S	S	S													B		S	S	T	T																									T			T	T	T										S
Template Predicted Secondary structure																				.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																																.	.	.	.
Predicted Secondary structure																			.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	T	E	V	Y	D	E	S	N	E	I	D	F	Y	E	D	.	.	.	.	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I	N
Query Conservation																			.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	T	L	L	W	D	R	K	T	G	K	P	L	H	N	A	I	V	W	Q	D	R	R	T	T	P	L	C	E	A	L	R	A	K	G	L	E	P	L	F	R	E	R	T	G	L	L	F	D	P	Y	F	S	G	T	K	L	V	W	L	L	E	N	V	P	G	L	K	A	R	A	E	G	G	G	V	A	F	G
Template Known Secondary structure		S							T	T	T	T			S	S					T	T														T	T							T	T	T	S			S		S	S	S												S	T	T					T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		126	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure							.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	P	I	R	.	.	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K	S	I	L	I	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y
Query Conservation							.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																						.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		T	V	D	T	W	L	I	W	N	L	T	G	G	K	V	H	A	T	D	P	T	N	A	S	R	T	L	L	.	F	N	L	H	T	L	A	W	D	P	E	L	L	E	A	L	G	I	P	A	A	L	L	P	E	V	R	P	S	D	G	D	F	G	E	T	L	P	E	L	L	G	A	P	V	P	I	R	G	V	L
Template Known Secondary structure												T	T	T	S				B							T	S	T	T	.	B		S	S	S	S	S	B								T				T	T	S				B			T	T	S				B							S	S			B
Template Predicted Secondary structure																														.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220																					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	A	Y	N	Y	G	S	I	L	T	A	T	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	V	D	A	D	S	I	E	M	A	G	R	D	I	T	D	D	I	A	Q	G	L
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		G	D	Q	Q	A	A	L	F	G	Q	A	A	L	G	.	.	G	G	E	G	K	C	T	Y	G	T	G	A	F	L	L	L	N	T	G	K	R	P	V	L	S	E	K	G	L	L	A	T	V	A	W	S	L	G	G	R	A	T	Y	A	L	E	G	S	L	F	V	A	G	A	A	V	G	W	L	K	E	V	G	L
Template Known Secondary structure											T	T			S	.	.	T	T							S	S	S									S	S					S	S	S										T	T											S		S	T								T	T	T	S
Template Predicted Secondary structure																.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	Q	Y	T	Q	K	D	L	S	D	F	I	E	A	R	V	E	E	I	F	F	E	V	F	D	V	L
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		I	R	E	S	A	E	V	E	A	.	.	.	.	.	.	.	L	A	A	S	V	E	D	T	G	D	V	Y	F	V	P	A	F	T	G	L	G	A	P	Y	W	D	P	Y	A	R	G	T	L	L	G	L	T	R	G	T	S	R	A	H	L	A	R	A	A	L	E	G	V	A	F	Q	V	R	D	V	V	L	A	M
Template Known Secondary structure		S	S	S	T	T	T				.	.	.	.	.	.	.		G	G	G		S	S		S	S							T	T				T	T	T			T	T										T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.								.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	L	G	L	T	K	V	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	T	I	S	S	S	I
Query Conservation
Alig confidence					.																																				.	.	.	.	.	.	.	.
Template Conservation					.																																				.	.	.	.	.	.	.	.
Template Sequence		E	E	E	.	A	G	V	R	L	K	V	L	K	A	D	G	G	M	A	Q	N	R	L	F	L	K	I	Q	A	D	L	L	G	V	P	V	A	V	P	.	.	.	.	.	.	.	.	E	V	T	E	T	T	A	L	G	A	A	L	M	A	G
Template Known Secondary structure				S	.	S	S										S	G	G	G	G													T	S						.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure					.																																				.	.	.	.	.	.	.	.
Template SS confidence
		392	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.									430	.	.	.	.	.	.	.	.	.	440	.	.	.	.