Job Description O07325 Confidence 99.96% Date Tue Jul 17 17:05:02 BST 2012 Rank 16 Aligned Residues 308 % Identity 10% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	N	G	I	N	V	.	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	L	K	L	P	I	I	G	T
Query Conservation																												.
Alig confidence																												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	V	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	H	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	L	N	G	E	Q
Template Known Secondary structure										S	S									T	T	S													S	S					S	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																											.	.	50	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		E	V	Y	D	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E	V	I	N	V	F	P	.	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I	A	I	Q	K
Query Conservation																																															.
Alig confidence																																															.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	F	D	P	I	S	P	D	T	N	I	A	W	Q	Y	S	D	V	N	V	V	A	V	H	H	A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	L	T	E	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	G	G	G	G	S													T	S	S			S															B		T	T	S		B												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																											.	.	.
Query SS confidence																																				.																											.	.	.
Query Sequence		S	I	L	I	N	M	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	L	T	A	T	.	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R	G	E	L	.	.	.	V	D	A	D	S	I	E	M	A	G	R	D	I	T	D	D
Query Conservation																																				.																											.	.	.
Alig confidence																																				.																											.	.	.
Template Conservation
Template Sequence		F	R	K	K	I	T	L	N	G	G	D	T	F	T	I	K	D	V	K	V	M	P	E	S	I	P	A	G	Y	E	V	L	Q	E	L	D	E	L	D	S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	G	K	L	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	T	S	A
Template Known Secondary structure		T	T	S					T	T	B													S										T	T	S		T	T										S	S									G	G	G										T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		I	A	Q	G	L	N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	Q	Y	T	Q	K	D	L	S	D	F	I	E	A	R	V	E	E	I	F	F	E	V	F	D	V	L	Q	D	L	G	L	T	.	K	V	N
Query Conservation																																																																														.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	D	A	L	S	L	A	R	T	K	G	S	S	Y	L	A	D	D	I	I	I	H	R	K	D	.	.	.	.	.	.	.	.	.	.	.	.	N	N	Y	L	K	Q	R	I	N	D	E	N	K	I	S	I	V	T	E	A	M	N	E	A	L	R	K	L	E	Q	R	V	L	N	T	L	N	E	F	S	G	Y
Template Known Secondary structure						T	T			T	T	G	G	G										T	T	T		.	.	.	.	.	.	.	.	.	.	.	.									S		S																										T	T			S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.													.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	T	I	S	S	S
Query Conservation
Alig confidence														.	.													.	.	.	.
Template Conservation														.	.													.	.	.	.
Template Sequence		T	H	V	M	V	I	G	G	G	A	E	L	.	.	I	C	D	A	V	K	K	H	T	Q	I	R	.	.	.	.	D	E	R	F	F	K	T	N	N	S	Q	Y	D	L	V	N	G	M	Y	L	I	G
Template Known Secondary structure								S	T	T				.	.										T			.	.	.	.	G	G	G					S		G	G	G
Template Predicted Secondary structure														.	.													.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions