Job Description O07325 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 12 Aligned Residues 315 % Identity 19% Template c1jcgA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp Resolution 3.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		M	E	E	H	Y	Y	V	S	I	D	I	G	S	S	S	V	K	T	I	V	G	E	K	F	H	.	.	N	G	I	N	V	I	G	T	G	Q	T	Y	T	S	G	I	K	N	G	L	I	D	D	F	D	I	A	R	Q	A	I	K	D	T	I	K	K	A	S	I	A	S	G	V	D	I	K	E	V	F	L	K	L
Query Conservation																											.	.
Alig confidence								.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	R	K	D	I	.	G	I	D	L	G	T	A	N	T	L	V	F	L	R	G	K	G	I	V	V	N	E	P	S	V	I	A	I	D	S	T	T	G	E	I	L	K	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	A	K	N	M	I	G	K	T	P	A	T	I	K	A	I	R
Template Known Secondary structure				S				.						S	S							T	T	T								S						T	T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T	S			T	T
Template Predicted Secondary structure								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	I	G	T	E	V	Y	D	E	S	N	E	I	D	F	Y	E	D	T	E	I	N	G	S	H	I	E	K	V	L	E	G	I	R	E	K	N	D	V	Q	E	T	E	V	I	N	V	F	P	I	R	F	I	V	D	K	E	N	E	V	S	D	P	K	E	L	I	A	R	H	S	L	K	V	E	A	G	V	I
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	.	.	.	.	.	.	.	.	.	.	M	R	D	G	V	I	A	D	Y	T	V	A	L	V	M	L	R	Y	F	I	N	K	A	K	G	G	M	N	L	F	K	P	R	V	V	I	G	V	P	I	G	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.			T	T			S	S																	T	S			S	S										S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64											.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	I	Q	K	S	I	L	I	N	M	I	K	C	V	E	A	C	G	V	D	V	L	D	V	Y	S	D	A	Y	N	Y	G	S	I	L	T	A	T	.	E	K	E	L	G	A	C	V	I	D	I	G	E	D	V	T	Q	V	A	F	Y	E	R	G	E	L	V	D	A	D	S	I	E	M	A	G	R	D	I	T	D
Query Conservation																																								.
Alig confidence		.	.	.																																				.
Template Conservation		.	.	.
Template Sequence		.	.	.	D	V	E	R	R	A	I	L	D	A	G	L	E	A	G	A	S	K	V	F	L	I	E	E	P	M	A	A	A	I	G	S	N	L	N	V	E	E	P	S	G	N	M	V	V	D	I	G	G	G	T	T	E	V	A	V	I	S	L	G	S	I	V	T	W	E	S	I	R	I	A	G	D	E	M	D	E
Template Known Secondary structure		.	.	.													T	T	T		S														T	T	T			S	S	S	S	S									S	S									T	T									S		S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		238	.	240	.	.	.							.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																				.	.	.	.
Query SS confidence								.	.	.	.	.	.																				.	.	.	.
Query Sequence		D	I	A	Q	G	L	.	.	.	.	.	.	N	T	S	Y	E	T	A	E	K	V	K	H	Q	Y	G	H	A	F	Y	.	.	.	.	D	S	A	S	D	Q	D	I	F	T	V	E	Q	V	D	S	D	E	T	V	Q	Y	T	Q	K	D	L	S	D	F	I	E	A	R	V	E	E	I	F	F	E	V	F	D	V
Query Conservation								.	.	.	.	.	.																				.	.	.	.
Alig confidence								.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		A	I	V	Q	Y	V	R	E	T	Y	R	V	A	I	G	E	R	T	A	E	R	V	K	I	E	I	G	N	V	F	P	S	K	E	N	D	E	L	E	T	T	V	S	G	I	D	L	S	T	G	L	P	R	K	L	T	L	K	G	G	E	V	R	E	A	L	R	S	V	V	V	A	I	V	E	S	V	R	T	T
Template Known Secondary structure																													B		S							T										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		308	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		L	Q	D	L	G	L	T	K	V	.	.	.	.	N	G	G	F	I	V	T	G	G	S	A	N	L	L	G	V	K	E	L	L	S	D	M	V	S	E	K	V	R	I	H	T	P	S	Q	M	G	I	R	K	P	E	F	S	S	A	I	S	T	I	S	S	S	I	A	F	D	E	L	L	D	Y
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.																															.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.
Template Sequence		L	E	K	T	P	P	E	L	V	S	D	I	I	E	R	G	I	F	L	T	G	G	G	S	L	L	R	G	L	D	T	L	L	Q	K	E	T	G	I	S	V	I	R	.	.	.	.	.	.	.	S	E	E	P	L	T	A	V	A	K	G	A	G	M	V	L	D	K	V	N	I	L	K	K	L
Template Known Secondary structure				T	S																	S	G	G	G		S	B	T											S					.	.	.	.	.	.	.		S	S	S	T	T									T	T	S						T	T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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