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Job DescriptionO07325
Confidence100.00%DateTue Jul 17 17:05:02 BST 2012
Rank11Aligned Residues316
% Identity17%Templatec1hpmA_
PDB info PDB header:hydrolase (acting on acid anhydrides)Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30. ........ 40.........50.........60.........70.........80
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Query Sequence  YVSIDIGSSSVKTIVGEKFHNGINVI. . . . GTGQTYTS. GIKNGLIDDFDIARQAIKDTIKKASIASGVDIKEVFLKLPI
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Template Sequence  AVGIDLGTTYSCVGVFQ. . HGKVEIIANDQGNRTTPSYVAFTDTERL. . . . . . . . . . . IGDAAKNQVAMNPTNTVFDAKR
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SS..TT


TTS
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SS
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GGG

GGG
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   6...10.........20.. .......30.........40.........50 .........60.........70..
 
   81.... ....90.........100.........110.........120.........130...
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Query Sequence  IGTEV. . . . . . . . . . . . . . . . . . . . . . . . . . . YDESNEIDFYEDTEINGSHIEKVLEGIREKNDVQETEVINVFPIRFIV
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Template Sequence  LIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFN.
Template Known Secondary structure  TTT

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SSTTTT
TS



TT

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   73......80.........90.........100.........110.........120.........130.........140.........150.
 
   134.....140.........150.........160.........170.........180.........190...... ...200.........210
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Query Sequence  DKENEVSDPKELIARHSLKVEAGVIAIQKSILINMIKCVEACGVDVLDVYSDAYNYGSILTAT. . . EKELGACVIDIGED
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGG
Template Known Secondary structure  ............................TT
TTTTS

SS

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   152.......160.........170.........180.........190.........200...
 
   211........220 .........230.........240... ......250.........260......
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Query Sequence  VTQVAFYERG. . . . . ELVDADSIEMAGRDITDDIAQGL. . . . . . . . . . . . . . . . . . . NTSYETAEKVKHQYGHAFYDSAS
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Template Sequence  TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSS. . . . TQ
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TTTT
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TT
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   204.....210.........220.........230.........240.........250.........260.........270....... ..
 
   267..270.........280.........290.........300.........310.... .....320.........330.........340.....
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Query Sequence  DQDIFTVEQVDSDETVQYTQKDLSDFIEARVEEIFFEVFDVLQDLGLT. KVNGGFIVTGGSANLLGVKELLSDMVSEKVR
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Template Sequence  ASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK. .
Template Known Secondary structure  TTTT

GGG

SGGGG
TTT
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   280.........290.........300.........310.........320.........330.........340.........350.......
 
   346...350.........360.........370...
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Query Sequence  IHTPSQMGIRKPEFSSAISTISSSIAFD
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Template Sequence  . . . . ELNKSINPDEAVAYGAAVQAAILS
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TTT
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   358.360.........370.........380.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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