Return to main results Retrieve Phyre Job Id

Job DescriptionP68805
Confidence8.03%DateTue Jul 17 17:05:13 BST 2012
Rank15Aligned Residues43
% Identity14%Templatec2cazB_
PDB info PDB header:protein transportChain: B: PDB Molecule:vacuolar protein sorting-associated protein PDBTitle: escrt-i core
Resolution3.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90.. .......100.........110.........120
Predicted Secondary structure  ...












Query SS confidence 














. . .



























Query Sequence  FALFIFVKIANTLMK. . . KEEAEEEAVVEENVVLLTEIRDLLREKK
Query Conservation   


 


   
  
...               

 





    
Alig confidence 














...



























Template Conservation 
 




 


 







 

  


  
 


 


       
Template Sequence  SEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQN
Template Known Secondary structure  TTTSS
TSSS
Template Predicted Secondary structure 




Template SS confidence 













































   41........50.........60.........70.........80......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions