Phyre 2 alignment of P0A0I4 with c3ebjD_

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Job Description | P0A0I4
Confidence | 3.02% | Date | Tue Jul 17 17:05:06 BST 2012
Rank | 44 | Aligned Residues | 24
% Identity | 17% | Template | c3ebjD_
PDB info | PDB header:transferase | Chain: D: PDB Molecule:polymerase acidic protein; | PDBTitle: crystal structure of an avian influenza virus protein
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . |  | . | . | . | . | 20 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | K | K | E | S | F | F | K | G | V | K | S | E | M | . | E | K | T | S | W | P | T | K | E | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | R | I | K | T | R | L | F | T | I | R | Q | E | M | A | S | R | G | L | W | D | S | F | R | Q
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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