Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 27 Aligned Residues 283 % Identity 21% Template c4dnaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:probable glutathione reductase; PDBTitle: crystal structure of putative glutathione reductase from sinorhizobium2 meliloti 1021 Resolution 2.80 Å

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		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.																						250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	L	R	T	G	I	V	A	D	R	.	I	G	G	Q	V	N	D	T	A	G	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	I	T	V	K	E	T	T	G	S	E	F
Query Conservation																																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Y	D	L	F	V	I	G	G	G	S	G	G	V	R	S	G	R	L	A	A	A	L	G	K	K	V	A	I	A	E	E	F	R	Y	G	G	T	C	V	I	R	G	C	V	P	K	K	L	Y	V	Y	A	S	Q	F	A	E	H	F	E	D	A	A	G	F	G	W	T	V	G	E	S	R	F	D	W	A	K	L
Template Known Secondary structure		S									S												T	T	T								S	S		T	T							S																				G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		263	.	.	.	.	.	.												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.																																																			.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.																																																			.
Query Sequence		S	S	N	L	A	A	H	.	.	.	.	.	.	.	.	.	.	.	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R	K	L	.	N	I	P	G	E	E	Q	L	I	N	K
Query Conservation									.	.	.	.	.	.	.	.	.	.	.																																																			.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.															.	.	.	.																																	.							.	.	.	.	.
Template Conservation																																		.	.	.	.																																								.	.	.	.	.
Template Sequence		V	A	A	K	E	Q	E	I	A	R	L	E	G	L	Y	R	K	G	L	A	N	A	G	A	E	I	L	D	T	R	A	E	.	.	.	.	L	A	G	P	N	T	V	K	L	L	A	S	G	K	T	V	T	A	E	R	I	V	I	A	V	G	G	H	P	S	P	H	D	A	L	P	G	H	E	.	.	.	.	.
Template Known Secondary structure																								T						S				.	.	.	.		S	S	S	S					T	T	T	T																				T	T	S	T	T	G	G	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.																																								.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	.	.	.	.	.	N	V	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence		L	C	I	T	S	N	E	A	F	D	L	P	A	L	P	E	S	I	L	I	A	G	G	G	Y	I	A	V	E	F	A	N	I	F	H	G	L	G	V	K	T	T	L	I	Y	R	G	K	E	I	L	S	R	F	D	Q	D	X	R	R	G	L	H	A	A	X	E	E	K	G	I	R	I	L	C	E	D	I	I	Q
Template Known Secondary structure		G		B						T	T		S	S			S								S													T	T								S	S	S	S	S	S	T	T	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		E	V	V	G	E	D	H	V	T	G	I	R	Y	E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	.	.	.	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	T	N	V	P	G	I	F	A	A	G	D	V	T	D	Q	K
Query Conservation																																												.	.	.
Alig confidence																.	.	.	.																									.	.	.
Template Conservation																.	.	.	.
Template Sequence		S	V	S	A	D	A	D	G	R	R	V	A	T	T	.	.	.	.	X	K	H	G	E	I	V	A	D	Q	V	X	L	A	L	G	R	X	P	N	T	N	G	L	G	L	E	A	A	G	V	R	T	N	E	L	G	A	I	I	V	D	A	F	S	R	T	S	T	P	G	I	Y	A	L	G	D	V	T	D	R	V
Template Known Secondary structure							T	T	S							.	.	.	.	S	S	S						S						S					S		T	T	S	S	T	G	G	G	T			B		T	T	S		B				T	T		B		S	S	T	T					S	G	G	G	S	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	L	T	P	V	A	I	H	E	A	X	C	F	I	E	T	E	Y
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions