Job Description O05204 Confidence 99.98% Date Tue Jul 17 17:05:01 BST 2012 Rank 76 Aligned Residues 298 % Identity 18% Template c3s5wB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-ornithine 5-monooxygenase; PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa Resolution 1.90 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.											.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																					.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	.	.	.	.	.	A	R	K	G	L	R	T	G	I	V	A	D	R	.	.	.	.	.	.	.	.	.	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	L	I	G	V	G	F	G	P	S	N	I	A	L	A	I	A	L	Q	E	R	A	Q	A	Q	G	A	L	E	V	L	F	L	D	K	Q	G	D	Y	R	W	H	G	N	T	L	V	S	Q	S	E	L	Q	I	S	F	L	K	D	L	V	S	L	R	N	P	T	S	P	Y	S	F	V	N	Y	L	H	K	H
Template Known Secondary structure			S							S																											S		S	S			S	S	G	G	G			S	S		B		S	S		G	G	G	S	S	S	T	T	T		T	T	S	T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
											253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290								.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	.	.	.	.	.	.	.	E	A	I	K	V	T	L	E	N	G	A	.	.	V	L	E	S	K	T	V	I	I	A	T	G	A
Query Conservation		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.												.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		D	R	L	V	D	F	I	N	L	G	T	F	Y	P	C	R	M	E	F	N	D	Y	L	R	W	V	A	S	H	F	Q	E	Q	S	R	Y	G	E	E	V	L	R	I	E	P	M	L	S	A	G	Q	V	E	A	L	R	V	I	S	R	N	A	D	G	E	E	L	V	R	T	T	R	A	L	V	V	S	P	G	G
Template Known Secondary structure		T									T		S			B													G	G	G	T	T	T				S												T	T												T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																																							.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	R	K	L	N	I	P	G	E	E	Q	L	I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	.	.	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.																	.	.	.	.	.	.	.	.	.
Alig confidence																									.																														.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		T	P	R	I	P	Q	V	F	R	A	L	K	G	D	G	R	V	F	H	H	S	Q	Y	.	L	E	H	M	A	K	P	M	K	I	A	I	I	G	G	G	Q	S	A	A	E	A	F	I	D	L	N	D	S	Y	P	S	V	Q	A	D	M	I	L	R	A	S	A	L	K	P	A	D	D	S	P	F	V	N	E	V
Template Known Secondary structure							G	G	G	G	G	G	T	T		T	T				G	G	G		.					T											S															T	T								S	S	S	S			B					T	T	G	G	G	G
Template Predicted Secondary structure																									.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
																																												384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	D	H	V	T	G	I	R	Y	E	D	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	P	K	F	T	D	L	I	Y	S	R	E	H	A	E	R	E	R	L	L	R	E	Y	H	N	T	N	Y	S	V	V	D	T	D	L	I	E	R	I	Y	G	V	F	Y	R	Q	K	V	S	G	I	P	R	H	A	F	R	C	M	T	T	V	E	R	A	T	A	T	A	Q	G	I	E	L	A	L	R	D	A
Template Known Secondary structure		G	S									T	S												T	G	G	G	T	S	S		B																			T				S				T	T										S	S	S								T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.			.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.				.	.	.	470	.	.	.	.	.	.	.	.	.				480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																										.	.																						.	.	.														.	.	.
Query SS confidence																										.	.																						.	.	.														.	.	.
Query Sequence		N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	.	.	W	L	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	.	.	.	T	N	V	P	G	I	F	A	A	G	D	V	T	.	.	.	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G
Query Conservation																										.	.																						.	.	.														.	.	.
Alig confidence																										.	.																						.	.	.														.	.	.
Template Conservation
Template Sequence		G	S	G	E	L	S	V	E	T	Y	D	A	V	I	L	A	T	G	Y	E	R	Q	L	H	R	Q	L	L	E	P	L	A	E	Y	L	G	D	H	E	I	G	R	D	Y	R	L	Q	T	D	E	R	C	K	V	A	I	Y	A	Q	G	F	S	Q	A	S	H	G	L	S	D	T	L	L	S	V	L	P	V	R	A
Template Known Secondary structure		T	T									S												S	S	S	S	S	S	G	G	G	G	G	G	B		S	S				T	T	S	B			B		T	T	B		S					S	S								T	T	T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		494	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	A	L	N	A	F	D	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	I	S	G	S	L	Y	Q	H	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions