Job Description O05204 Confidence 99.73% Date Tue Jul 17 17:05:01 BST 2012 Rank 129 Aligned Residues 297 % Identity 17% Template c3p4rM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit; PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate Resolution 3.05 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																									.	.										.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.										.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	.	.	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.										.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.										.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D	Y
Template Known Secondary structure			S							S												T	T		T	T								S	S		G	G	G	S	G	G	G	G			S							S	S	S															T	T		S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																																																										267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	H	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D	D
Template Known Secondary structure																T	T					B		T	T	S	S	B						T	T		S	S							T	T															T	T		T	T					T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		291	.	.					.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure					.	.	.	.								.	.																.
Query SS confidence					.	.	.	.								.	.																.
Query Sequence		E	A	I	.	.	.	.	K	V	T	L	E	N	G	.	.	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	.	W	R	K	L	N	I	P	G	E	E	Q	L	I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D
Query Conservation					.	.	.	.								.	.																.
Alig confidence					.	.	.	.								.	.																.
Template Conservation
Template Sequence		G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G	I	L	M	T
Template Known Secondary structure		S	B									T	T	T	T								S										G	G	G	S	S	S	B	S			T	T		S								G	G	G	T					S	T	T										T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.																										.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	G	I	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	D	H	V	T	G	I	R	Y
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G	E	K	K	L
Template Known Secondary structure		T					T	T						T	T	S		B	G	G	G	T	T	T	S		S				S	S				T	T	S	G	G	G	S																T		S				T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.									.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.																																	.	.	.	.	.	.	.	.
Query Sequence		E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	N	D	.	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	T	N	V	P	G	I	F	A	A	G	D	V	T	D	Q	.	.	.	.	.	.	.	.	K	N	K	Q	I	I	I	S
Query Conservation																																	.																																	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																				.																																	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		H	E	R	L	P	F	I	.	.	.	.	.	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L
Template Known Secondary structure									.	.	.	.	.								S				T	T	T	S																			T	T	S	B		S	S	B	T					G	G	G				S	S	S	T	T	S			T	T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.						.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	A	G	A	N	A	A	L	N	A	F	D	Y	I	I	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A
Template Known Secondary structure																		T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions