Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 6 Aligned Residues 401 % Identity 17% Template c2vdcI_ PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	I	T	D	M	S	P	R	L	S	L	S	E	K	S	L	K	R	T	P	S	F	S	V	N	R	P	G	E	E	T	G	V	T	F	A	G	I	P	L	G	H	E	F	N	S	L	V	L	A	I	L	Q	V	S	G	R	A	P	K	E	K	Q	S	I	I	D	Q	I	K	K	L	E	G	S	F	H	F	E
Query Conservation
Alig confidence																																		.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	F	A	E	I	Y	A	R	F	S	D	E	R	A	N	E	Q	A	N	R	C	S	Q	C	G	V	P	F	C	Q	V	.	.	.	.	.	H	C	P	V	S	N	N	I	P	D	W	L	K	L	T	S	E	.	.	.	.	.	.	.	.	.	G	R	L	E	E	A	Y	E	V	S	Q	A	T	N	N	F	P
Template Known Secondary structure									S	S				T	T								S				S	S						.	.	.	.	.	T	S	T	T														.	.	.	.	.	.	.	.	.	T														S
Template Predicted Secondary structure																																		.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.										.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		121	.	.	.	.	.	.	.	.				130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure											.	.	.						.	.
Query SS confidence											.	.	.						.	.
Query Sequence		T	F	I	S	L	T	C	Q	K	.	.	.	C	P	D	V	V	.	.	Q	A	L	N	L	M	S	V	I	N	P	N	I	T	H	S	M	I	D	G	A	V	F	R	E	E	S	E	N	I	M	A	V	P	A	V	F	L	N	G	E	E	F	G	N	G	R	M	T	I	Q	D	I	L	S	K	L	G	S	T	A
Query Conservation											.	.	.						.	.
Alig confidence											.	.	.						.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	C	G	R	I	C	P	Q	D	R	L	C	E	G	N	C	V	I	E	Q	S	T	H	G	A	V	T	I	G	S	V	E	K	Y	I	N	D	T	A	W	D	Q	G	W	V	K	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										G	G	G	S	G	G	G	G		G	G	G	G	S	S	S		S																		T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		D	A	S	E	F	E	N	K	E	P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y
Query Conservation																																												.	.
Alig confidence		.	.	.																																								.	.							.	.	.	.	.									.	.
Template Conservation		.	.	.																																																.	.	.	.	.									.	.
Template Sequence		.	.	.	T	P	S	R	E	L	G	L	S	V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	G	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G	L	L	V	.	.	.	.	.	Y	G	I	P	G	F	K	L	.	.	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A
Template Known Secondary structure		.	.	.		S		S	S											S														T								S	S	S	S		S	T				.	.	.	.	.		T	S		T	T	T	S	.	.															T
Template Predicted Secondary structure		.	.	.																																																.	.	.	.	.									.	.
Template SS confidence
					141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.																.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	.	W	R	K	L	N	I	P	G	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	I	N	K	G	V	A	F	C	P	H
Query Conservation																																												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.												.													.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.												.
Template Sequence		G	V	I	Y	H	P	N	F	E	V	.	.	.	.	.	.	.	.	G	R	D	A	S	L	P	E	L	R	R	.	K	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G	L	G	N	I	V	A	A	L	D	Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E
Template Known Secondary structure		T					T	T			B	.	.	.	.	.	.	.	.	T	T	T	B							S	.	S		S														T	T		S			T	T	T	T																	T	T	T		S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.												.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220									.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																			.												.
Query SS confidence																																			.												.
Query Sequence		C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H	.	V	T	L	F	E	F	A	S	E	L	K	.	A	D	N	V	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	D	H	V	T	G
Query Conservation																																			.												.
Alig confidence																																			.												.
Template Conservation
Template Sequence		N	G	S	L	N	A	A	G	K	H	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	I	R	Q	G	A	T	S	V	K	C	L	Y	R	R	D	R	K	N	M	P	G	S	Q	R	E	V	A	H	A	E	E	E	G	V	E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G
Template Known Secondary structure		T	T		S					S							S	S													T	T		S							S	S		S	T	T		S	S											T	T							S	S	S											T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		416	.	.	.	420	.	.																.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.																.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.																.
Query Sequence		I	R	Y	E	D	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	.	.	.	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	.	R	N	N	N	T	N	V	P	G	I	F	A	A	G
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.																.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.																.
Template Conservation
Template Sequence		V	R	A	V	R	I	H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P	E	L	K	V	T	R	W	G	T	L	L	V	D	H	R	T	K	M	T	N	M	D	G	V	F	A	A	G
Template Known Secondary structure		T														T	T																S						S													S	T	T	S		B		T	T	S	S	B				T	T	T		B		S	S	T	T					G
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	T	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F	D	Y	I	I	R
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		D	I	V	R	G	A	.	S	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I	H	A	Y	A	K	A
Template Known Secondary structure		G	G	G	S	S		.		S
Template Predicted Secondary structure								.
Template SS confidence
		442	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470