 |
| Job Description | O05204 | | Confidence | 95.10% | Date | Tue Jul 17 17:05:01 BST 2012 |
| Rank | 396 | Aligned Residues | 111 |
| % Identity | 10% | Template | c2dmlA_ |
| PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:protein disulfide-isomerase a6; |
PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6
|
| Resolution | UNK |
|
 |
|   |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
. | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
. | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  | . | . |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
| Query Sequence |   |
I | L | Q | V | S | G | R | A | P | K | E | K | Q | S | I | I | D | Q | I | K | K | L | E | G | S | F | H | F | E | T | F | I | S | L | T | C | Q | K | C | P | D | V | V | Q | A | L | N | L | M | S | V | I | . |
N | P | N | I | T | H | S | M | I | D | G | A | V | F | R | E | E | S | E | N | . |
. |
I | M | A | V | P |
| Query Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|   |   | . |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| Template Conservation |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
| Template Sequence |   |
L | Y | S | S | S | D | D | V | I | E | L | T | P | S | N | F | N | R | E | V | I | Q | S | D | G | L | W | L | V | E | F | Y | A | P | W | C | G | H | C | Q | R | L | T | P | E | W | K | K | A | A | T | A | L | K | D | V | V | K | V | G | A | V | N | A | D | K | H | Q | S | L | G | G | Q | Y | G | V | Q | G | F | P |
| Template Known Secondary structure |   |
S | S |
| T | T | S | S | S |  |  |
|
| T | T | T |  |  |  |  | T | T | T |
| S | S |
|  |  |  |  |  |  |
| T | T |
| S | T | T | G | G | G |  |  |  |  |  |  |  |  |  |  | T | T | T | T | S |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  | T |
|
| S | S | S |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
|   |
|   |   |
169 | 170 | |
. | . | . | . | . | |
|
|
|
. | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . |
| Predicted Secondary structure |   |
|
| . |
|
|
|
|
| . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
| . |
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | V | . |
F | L | N | G | E | . |
. |
. |
. |
E | F | G | N | G | R | M | T | I | Q | D | I | L | S | K | L | G | S | T | A | D | A | S | E | F | E | N |
| Query Conservation |   |
  |   | . |   |   |
|   |   | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| Alig confidence |   |
|
| . |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |
|
|
| Template Sequence |   |
T | I | K | I | F | G | A | N | K | N | K | P | E | D | Y | Q | G | G | R | T | G | E | A | I | V | D | A | A | L | S | A | L | R | S | G | P | S | S | G |
| Template Known Secondary structure |   |
 |  |  |  |  | S | S |
| T | T | S |
|  |  |
|
| S |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|