Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 36 Aligned Residues 293 % Identity 18% Template c1zkqA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial; PDBTitle: crystal structure of mouse thioredoxin reductase type 2 Resolution 2.60 Å

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.
Predicted Secondary structure																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	V	N	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	S	F	D	L	L	V	I	G	G	G	S	G	G	L	A	C	A	K	E	A	A	Q	L	G	K	K	V	A	V	A	D	Y	V	E	P	S	P	R	G	T	K	W	G	L	G	G	T	C	V	N	V	G	C	I	P	K	K	L	M	H	Q	A	A	L	L	G	G	M	I	R	D	A	H	H	Y	G	W	E
Template Known Secondary structure													S													T	T													T	T						S	S							S																							T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
								246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																								.	.
Query SS confidence		.	.	.	.	.	.																																																								.	.
Query Sequence		.	.	.	.	.	.	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	.	.	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R
Query Conservation		.	.	.	.	.	.																																																								.	.
Alig confidence		.	.	.	.	.	.																																				.	.	.																		.	.
Template Conservation																																											.	.	.
Template Sequence		V	A	Q	P	V	Q	H	N	W	K	T	M	A	E	A	V	Q	N	H	V	K	S	L	N	W	G	H	R	V	Q	L	Q	D	R	K	V	K	Y	F	N	I	.	.	.	K	A	S	F	V	D	E	H	T	V	R	G	V	D	K	G	G	K	A	T	L	L	S	A	E	H	I	V	I	A	T	G	G	R	P	R
Template Known Secondary structure				S																															T	T							.	.	.	B			B	S	S	S	S					B		T	T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		K	L	N	I	P	G	E	E	Q	L	I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	.	.	.	.	D	N	V	L	Q	D	R	L	R	S	L
Query Conservation																																																																			.	.	.	.
Alig confidence										.	.	.																																																							.	.	.	.
Template Conservation										.	.	.
Template Sequence		Y	P	T	Q	V	K	G	A	.	.	.	L	E	Y	G	I	T	S	D	D	I	F	W	L	K	E	S	P	G	K	T	L	V	V	G	A	S	Y	V	A	L	E	C	A	G	F	L	T	G	I	G	L	D	T	T	V	M	M	R	S	I	P	L	R	G	F	D	Q	Q	M	S	S	L	V	T	E	H	M	E	S
Template Known Secondary structure				T	T		B	T		.	.	.					B						T	T		S	S				S							S													T	T								S	S		S	S	T	T	S														T
Template Predicted Secondary structure										.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																						.	.	.											.
Query SS confidence																			.																																						.	.	.											.
Query Sequence		S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	.	D	H	V	T	G	I	R	Y	E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	.	.	.	N	D	A	V	E	L	N	E	R	G	.	E	I	V	I	D	R	N	N	N	T	N
Query Conservation																			.																																						.	.	.											.
Alig confidence																			.																																						.	.	.											.
Template Conservation
Template Sequence		H	G	T	Q	F	L	K	G	C	V	P	S	H	I	K	K	L	P	T	N	Q	L	Q	V	T	W	E	D	H	A	S	G	K	E	D	T	G	T	F	D	T	V	L	W	A	I	G	R	V	P	E	T	R	T	L	N	L	E	K	A	G	I	S	T	N	P	K	N	Q	K	I	I	V	D	A	Q	E	A	T	S
Template Known Secondary structure		T	T						T										T	T	S									T	T	S	S	S							S						S					S		G	G	G	T	G	G	G	G	T					S	S	S			B				T	T	S	B		S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	G	I	F	A	A	G	D	V	T	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	H	I	Y	A	I	G	D	V	A	E	G	R	P	E	L	T	P	T	A	I	K	A	G	K	L	L	A	Q	R	L	F
Template Known Secondary structure		S	T	T					G	G	G	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions