Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 72 Aligned Residues 288 % Identity 17% Template c1x31A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.
Predicted Secondary structure																																		.	.																																						.
Query SS confidence																																		.	.																																						.
Query Sequence		Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	.	I	D	A	M	T	G	I	R
Query Conservation																																		.	.																																						.
Alig confidence																																		.	.								.	.	.	.																											.
Template Conservation																																											.	.	.	.
Template Sequence		T	D	V	L	V	V	G	A	G	P	A	G	L	A	A	A	R	E	A	S	R	S	G	A	R	V	M	L	L	D	E	R	P	E	A	G	G	T	L	R	E	.	.	.	.	A	S	G	E	Q	I	D	G	I	D	A	A	Q	W	I	D	A	V	T	E	E	L	A	A	A	E	E	T	T	H	L	Q	R	T	T
Template Known Secondary structure										S													T	T								S	S	S	S	S		G	G	G	G	G	.	.	.	.			S				T	T																		T	T					S	S
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.																.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R	K	L	N	I	P	G	E	E	Q	.	.	L	I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		V	F	G	S	Y	D	A	N	Y	I	L	A	A	Q	R	R	T	V	H	L	D	G	P	S	G	Q	G	V	S	R	E	R	I	W	H	I	R	A	K	Q	V	V	L	A	T	A	A	H	E	R	P	I	V	F	E	N	N	D	R	P	G	I	M	L	A	G	S	V	R	S	Y	L	N	R	F	G	V	R	A	G
Template Known Secondary structure							T	T	T									S	T	T		S	S				T	T			S																									B	T	T	T	S	T	T																		S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																																																			.	.													.
Query SS confidence																																																																			.	.													.
Query Sequence		K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	N	V	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	.	.	D	H	V	T	G	I	R	Y	E	D	M	N	.
Query Conservation																																																																			.	.													.
Alig confidence																																							.	.	.	.																									.	.													.
Template Conservation																																							.	.	.	.
Template Sequence		S	K	I	A	V	A	T	T	N	D	S	V	Y	P	L	V	S	E	L	A	A	S	G	G	V	V	A	V	I	D	A	R	Q	N	I	S	A	.	.	.	.	A	A	A	Q	A	V	T	D	G	V	T	V	L	T	G	S	V	V	A	N	T	E	A	D	A	S	G	E	L	S	A	V	L	V	A	T	L	D	E
Template Known Secondary structure		S	S						S	S	G	G	G								G	G	G	T			S						S	S	S				.	.	.	.								T	T					T	T										T	T	S	S									B		T
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
					423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																												.
Query SS confidence		.	.	.																												.
Query Sequence		.	.	.	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	N	D	.	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	T	N	V	P	G	I	F	A	A	G	D	V	T	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L
Query Conservation		.	.	.																												.
Alig confidence		.	.	.																												.									.																								.	.
Template Conservation																																									.																								.	.
Template Sequence		Q	R	N	L	G	E	A	Q	R	F	E	A	D	V	L	A	V	S	G	G	F	N	P	V	V	H	L	H	S	Q	R	Q	G	K	L	N	W	D	T	.	S	I	H	A	F	V	P	A	D	A	V	A	N	Q	H	L	A	G	A	L	T	G	L	.	.	L	D	T	A	S	A	L	S	T	G	A	A	T	G	A
Template Known Secondary structure		T			B									S																		T	T							T	.	T	T	T						S			T	T					G	G	G	G	T		.	.		S
Template Predicted Secondary structure																																									.																								.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		499	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	F	D	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	A	S	A	A
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions