Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 1 Aligned Residues 506 % Identity 54% Template c1hyuA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: crystal structure of intact ahpf Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		M	L	N	A	D	L	K	Q	Q	L	K	Q	L	L	E	L	M	E	G	N	V	E	F	V	A	S	L	G	S	D	D	K	S	K	E	L	K	D	L	L	T	E	I	T	D	M	S	P	R	L	S	L	S	E	K	S	L	.	.	K	R	T	P	S	F	S	V	N	R	P	G	E	E	T	G	V	T	F	A	G
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence		M	L	D	T	N	M	K	T	Q	L	R	A	Y	L	E	K	L	T	K	P	V	E	L	I	A	T	L	D	D	S	A	K	S	A	E	I	K	E	L	L	A	E	I	A	E	L	S	D	K	V	T	F	K	E	D	N	T	L	P	V	R	K	P	S	F	L	I	T	N	P	G	S	Q	Q	G	P	R	F	A	G
Template Known Secondary structure																T	T			S										S	S															T	T		T	T							T	T	S	S	S		S	S							T	T				S					S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	L	G	H	E	F	N	S	L	V	L	A	I	L	Q	V	S	G	R	A	P	K	E	K	Q	S	I	I	D	Q	I	K	K	L	E	G	S	F	H	F	E	T	F	I	S	L	T	C	Q	K	C	P	D	V	V	Q	A	L	N	L	M	S	V	I	N	P	N	I	T	H	S	M	I	D	G	A	V	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	L	G	H	E	F	T	S	L	V	L	A	L	L	W	T	G	G	H	P	S	K	E	A	Q	S	L	L	E	Q	I	R	D	I	D	G	D	F	E	F	E	T	Y	Y	S	L	S	C	H	N	C	P	D	V	V	Q	A	L	N	L	M	A	V	L	N	P	R	I	K	H	T	A	I	D	G	G	T	F	Q
Template Known Secondary structure					G	G	G												T	T					S													S										T	T		S	S																T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		159	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure							.	.																													.	.	.
Query SS confidence							.	.																													.	.	.
Query Sequence		E	E	S	E	N	.	.	I	M	A	V	P	A	V	F	L	N	G	E	E	F	G	N	G	R	M	T	I	Q	D	I	L	S	K	L	.	.	.	G	S	T	A	D	A	S	E	F	E	N	K	E	P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	L	R	T	G	I
Query Conservation							.	.																													.	.	.
Alig confidence							.	.																													.	.	.
Template Conservation
Template Sequence		N	E	I	T	E	R	N	V	M	G	V	P	A	V	F	V	N	G	K	E	F	G	Q	G	R	M	T	L	T	E	I	V	A	K	V	D	T	G	A	E	K	R	A	A	E	A	L	N	K	R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	V	Y	S	A	R	K	G	I	R	T	G	L
Template Known Secondary structure							T	T			S	S	S					T	T						S														S	S										T	S											S													T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		V	A	D	R	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	.	.	.	E	A	I	K	V	T	L	E	N	G	A	V	L	E	S	K	T	V	I	I
Query Conservation																																																											.	.	.
Alig confidence																																																											.	.	.
Template Conservation
Template Sequence		M	G	E	R	F	G	G	Q	V	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	A	H	V	S	D	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	V	P	A	A	T	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	I
Template Known Secondary structure				S	S	T	T	G	G	G	T	T		S		B			B	T	T	B	S	S	B															T	S							S										S	S	T	T	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	G	A	G	W	R	K	L	N	I	P	G	E	E	Q	L	I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	N	V	L	Q	D	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	Q	V	L	Q	D	K	V
Template Known Secondary structure													T	T	T	T	T	T	T	T	T	T					T	T			G	G	G	G	B	T	S								S														B	S							S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	.	D	H	V	T	G	I	R	Y	E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	T	N	V
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	S	V	A	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	H	W	L	E	G	A	L	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	S	V
Template Known Secondary structure		T	T		T	T						S										S	S	S									T	T	T									S											S		G	G	G	T	T	T	S		B		T	T	S		B				T	T		B		S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	I	F	A	A	G	D	V	T	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F	D	Y	I	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F	D	Y	L	I	R
Template Known Secondary structure		T	T					S	T	T	B			S	S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.