Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 15 Aligned Residues 294 % Identity 20% Template c1gv4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.			.	.	240	.																					.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																															.	.											.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.											.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	E	N	K	E	P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	.	.	G	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	D	T	A	G	I	E	N	F	I	T	V
Query Conservation																															.	.											.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.											.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	R	A	P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	D	D	P	N	V	T	K	T	L	Q	F	R	Q	W	N	G	K	E	R	S	I	Y
Template Known Secondary structure															S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G	S				T	T										T	T	S					S	B
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.								.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.
Query Sequence		K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R	K	L	N	I	P	G	E	E	.	.	.	.	.	.	.	Q	L
Query Conservation																																																																									.	.	.	.	.	.	.
Alig confidence																																							.	.																																	.	.	.	.	.	.	.
Template Conservation																																							.	.
Template Sequence		F	Q	P	P	S	F	Y	V	S	A	Q	D	L	P	N	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	H	L	D	V	R	G	N	.	.	M	V	K	L	N	D	G	S	Q	I	T	F	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K	S	R	T	T
Template Known Secondary structure		S	S		G	G	G		B		G	G	G	G	G	G	S	T	T								S								T	T	T	T	.	.					T	T	S																								T	S						T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.					370	.	.	.	.	.	.	.	.	.	380	.	.	.							.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.															.	.	.	.	.	.
Query SS confidence																																												.	.	.	.															.	.	.	.	.	.
Query Sequence		I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	.	.	.	.	H	V	T	L	F	E	F	A	S	E	L	K	A	D	.	.	.	.	.	.	N	V	L	Q	D	R	L	R	S	L	S	N	V	D
Query Conservation																																												.	.	.	.															.	.	.	.	.	.
Alig confidence																																												.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	R	K	I	G	D	F	R	A	L	E	K	I	S	R	E	V	K	S	I	T	V	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	S	Q	A	S	G	I	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	Q	Y	L	S	N	W	T	M	E	K	V	K	R	E	G	V	K
Template Known Secondary structure					S												T	T		S								S																										S	S	S	S	T	T	T	T	T	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																																						.								.
Query SS confidence																																																						.								.
Query Sequence		I	K	T	N	A	K	T	T	E	V	V	G	E	D	H	V	T	G	I	R	Y	E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	N	D	.	A	V	E	L	N	E	R	.	G	E	I	V	I	D	R	N	N	N	T	N	V	P	G	I	F	A	A
Query Conservation																																																						.								.
Alig confidence																										.	.	.	.	.																								.								.													.
Template Conservation																										.	.	.	.	.																																													.
Template Sequence		V	M	P	N	A	I	V	Q	S	V	G	V	S	G	G	R	L	L	I	K	L	K	D	G	.	.	.	.	.	R	K	V	E	T	D	H	I	V	T	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E	I	D	S	D	F	G	G	F	R	V	N	A	E	L	Q	A	R	.	S	N	I	W	V	A
Template Known Secondary structure					S										T	T							T	T	S	.	.	.	.	.						S													T					T	T			B		T	T	T		S					T	T	S				.	T	T
Template Predicted Secondary structure																										.	.	.	.	.																																													.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.
		476	.	.	.									480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.
Query Sequence		G	D	V	T	.	.	.	.	.	.	.	.	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A
Query Conservation						.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	A	A	C	F	Y	D	I	K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M
Template Known Secondary structure		G	G	G						T	T	T
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions