Job Description O05204 Confidence 99.98% Date Tue Jul 17 17:05:01 BST 2012 Rank 78 Aligned Residues 288 % Identity 14% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.										.	.
Query SS confidence																											.	.										.	.
Query Sequence		E	P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	.	.	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	I	D	A	M	T
Query Conservation																											.	.										.	.
Alig confidence																											.	.										.	.																								.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		A	G	R	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	.	.	.	.	.	.	Y	D	G	L	R	A	H	G	I	Q	V	V	H
Template Known Secondary structure												S	T	T										T	T		T	T	S							S		S	S				S	T	T	T						T	S	S		G	G	G	G				.	.	.	.	.	.	S						T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.										.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.
Query Sequence		G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R	K	L	N	I	P	G	E	E	Q	L	I	N	K	G	V	A	F	C	P	H	.	.	.	.	.	.	.	.	.	C	D	G	P	L	F	E	N	K	D	V	A	V
Query Conservation																																																												.	.	.	.	.	.	.	.	.
Alig confidence			.											.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation			.											.	.
Template Sequence		D	.	S	A	T	G	I	D	P	D	K	K	.	.	L	V	K	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V
Template Known Secondary structure		S	.								T	T	T	.	.						T	S						S													T	T	S	T	T			T	T	G	G	G	T	S					S														S	S		T	T
Template Predicted Secondary structure			.											.	.
Template SS confidence
		75		.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		351	.	.	.	.	.												.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.								.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.													.	.																								.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.													.	.																								.	.	.	.	.	.	.
Query Sequence		I	G	G	G	N	S	.	.	.	.	.	.	.	.	.	.	.	G	V	E	A	A	I	D	L	A	G	I	V	.	.	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	N	V	L	Q	D	R	L	R	.	.	.	.	.	.	.	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E
Query Conservation								.	.	.	.	.	.	.	.	.	.	.													.	.																								.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.													.	.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	P	P	A	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D
Template Known Secondary structure							S	S		B		T	T																		T	T								S		S	S		T	T														T	T	T	T	T		S						T	T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.		.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480	.				.	.	.	.
Predicted Secondary structure																																																								.			.																.	.	.
Query SS confidence																																																								.			.																.	.	.
Query Sequence		D	H	V	T	G	I	R	Y	E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	.	N	N	.	T	N	V	P	G	I	F	A	A	G	D	V	T	D	Q	.	.	.	K	N	K	Q
Query Conservation																																																								.			.																.	.	.
Alig confidence													.	.	.	.	.																										.													.			.																.	.	.		.
Template Conservation													.	.	.	.	.																										.																																				.
Template Sequence		G	G	E	M	M	V	E	T	A	F	G	.	.	.	.	.	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	K	I	A	Q	I	A	G	L	.	T	N	D	A	G	W	C	P	V	D	I	K	T	F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	.	K	S
Template Known Secondary structure			T	T	T					T	T		.	.	.	.	.						S																		T		.		B	T	T	T	B	B		B		S	S	S		B	B	S	S	S	T	T					G	G	G	B			S	S	S		.	B	S
Template Predicted Secondary structure													.	.	.	.	.																										.																																				.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F	D	Y	I	I	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E
Template Known Secondary structure																					T	T
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions