Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 48 Aligned Residues 287 % Identity 24% Template c1ebdB_ PDB info PDB header:complex (oxidoreductase/transferase) Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250																						.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I	Y	T	A	R	K	G	L	R	T	G	I	V	A	D	R	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	T	V	K	E	T	T	G	S	E	F	S
Query Conservation																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	T	L	V	V	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	Q	K	V	T	I	V	E	K	G	N	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	I	S	A	S	H	R	Y	E	Q	A	K	H	S	E	E	M	G	I	K	A	E	N	V	T	I	D	F	A	K	V	Q
Template Known Secondary structure			S							S													T	T								S	S		T	T							S																			T		G	G	G	T					S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		264	.	.	.	.	.												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	L	A	A	H	.	.	.	.	.	.	.	.	.	.	.	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G	A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R	K	L	N	I	P	G	E	E	Q	L	I	N	K	G	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.												.	.																																												.	.	.	.
Template Conservation																														.	.																																												.	.	.	.
Template Sequence		E	W	K	A	S	V	V	K	K	L	T	G	G	V	E	G	L	L	K	G	N	K	V	E	I	V	K	G	.	.	E	A	Y	F	V	D	A	N	T	V	R	V	V	N	G	D	S	A	Q	T	Y	T	F	K	N	A	I	I	A	T	G	S	R	P	I	E	L	P	N	F	K	F	S	.	.	.	.	N	R	I
Template Known Secondary structure																						T	T						S	.	.							T	T							T	T								S														T	T				S	.	.	.	.	S	S
Template Predicted Secondary structure																														.	.																																												.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160					.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H	V	T	L	F	E	F	A	S	E	L	K	A	D	.	.	.	.	.	N	V	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		L	D	S	T	G	A	L	N	L	G	E	V	P	K	S	L	V	V	I	G	G	G	Y	I	G	I	E	L	G	T	A	Y	A	N	F	G	T	K	V	T	I	L	E	G	A	G	E	I	L	S	G	F	E	K	Q	M	A	A	I	I	K	K	R	L	K	K	K	G	V	E	V	V	T	N	A	L	A	K	G	A
Template Known Secondary structure									T		S	S			S								S														T								S	S	S	S	S	S	T	T	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		V	G	E	D	H	V	T	G	I	R	Y	E	D	M	N	T	G	E	E	H	L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	.	.	.	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	T	N	V	P	G	I	F	A	A	G	D	V	T	D	Q	K	N	K
Query Conservation																																										.	.	.
Alig confidence														.	.																											.	.	.																																				.
Template Conservation														.	.																																																																	.
Template Sequence		E	E	R	E	D	G	V	T	V	T	Y	E	.	.	A	N	G	E	T	K	T	I	D	A	D	Y	V	L	V	T	V	G	R	R	P	N	T	D	E	L	G	L	E	Q	I	G	I	K	M	T	N	R	G	L	I	E	V	D	Q	Q	C	R	T	S	V	P	N	I	F	A	I	G	D	I	V	P	G	P	.	A
Template Known Secondary structure					S	S	S							.	.		T	T								S						S					S		T	T	S	S					T			B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	S	S	S		.
Template Predicted Secondary structure														.	.																																																																	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	H	K	A	S	Y	E	G	K	V	A	A	E	A	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions