Job Description O05204 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 55 Aligned Residues 325 % Identity 16% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		157	.	.	160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure												.	.	.	.	.	.											.	.																						.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.											.	.																						.	.	.	.	.	.
Query Sequence		F	R	E	E	S	E	N	I	M	A	.	.	.	.	.	.	V	P	A	V	F	L	N	G	E	E	.	.	F	G	N	G	R	M	T	I	Q	D	I	L	S	K	L	G	S	T	A	D	A	.	.	.	.	.	.	S	E	F	E	N	K	E	P	Y	D	V	L	I	V	G	G	G	P	A	S	G	S	A	A	I
Query Conservation												.	.	.	.	.	.											.	.																						.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.											.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	F	L	P	Q	K	V	E	Q	G	R	Y	D	D	I	R	V	C	I	G	C	N	V	C	I	S	R	W	E	I	G	G	P	P	M	I	C	T	Q	N	A	T	A	G	E	E	Y	R	R	G	W	H	P	E	K	F	R	Q	T	K	N	K	D	S	V	L	I	V	G	A	G	P	S	G	S	E	A	A	R
Template Known Secondary structure			T	T							T	T		G	G	G																	S	S	S					S	S		T	T	T	T	T							B	T	T	B					S	S										S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		Y	T	A	R	K	G	L	R	T	G	I	V	A	D	R	.	.	I	G	G	Q	V	N	D	T	A	G	I	E	N	F	I	T	V	K	E	T	T	G	S	E	F	S	S	N	L	A	A	H	I	D	Q	Y	D	I	D	A	M	T	G	I	R	A	T	D	I	E	K	T	D	E	A	I	K	V	T	L	E	N	G
Query Conservation																	.	.
Alig confidence																	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	M	E	S	G	Y	T	V	H	L	T	D	T	A	E	K	I	G	G	H	L	N	Q	V	A	A	L	P	G	L	G	E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	K	K	N	K	E	S	Q	L	A	L	G	Q	K	.	.	.	.	.	.	.	.	.	.	.	P	M	T	A	D	D	V
Template Known Secondary structure						T	T								S	S	S	S	T	T	T	T					T	T	S	T	T		G	G	G	G																T		T	T						S			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.												.	470	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.									.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																				.	.	.	.	.	.	.	.																																				.	.
Query SS confidence																				.	.	.	.	.	.	.	.																																				.	.
Query Sequence		A	V	L	E	S	K	T	V	I	I	A	T	G	A	G	W	R	K	.	.	.	.	.	.	.	.	L	N	I	P	G	E	E	Q	L	I	N	K	G	V	A	F	C	P	H	C	D	G	P	L	F	E	N	K	D	V	A	V	I	G	G	.	.	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	N	H
Query Conservation																				.	.	.	.	.	.	.	.																																				.	.
Alig confidence																				.	.	.	.	.	.	.	.																																				.	.
Template Conservation
Template Sequence		L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	L	T	H	D	P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	G	K	K	K	I	G	K	R	V	V	I	L	N	A	D	T	Y	F	M	A	P	S	L	A	E	K	L	A	T	A	G	H	E
Template Known Secondary structure			T	S			S												S	S				T	T	T	S	S			T	T			T	T	S	T	T										T		S				S										S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380						.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.																			.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	L	F	E	F	A	S	E	L	.	.	.	.	.	K	A	D	N	V	L	Q	D	R	L	R	S	L	S	N	V	D	I	K	T	N	A	K	T	T	E	V	V	G	E	D	H	V	T	G	I	R	Y	E	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	G	E	E	H
Query Conservation												.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																															.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		V	T	I	V	S	G	V	H	L	A	N	Y	M	H	F	T	L	E	Y	P	N	M	M	R	R	L	H	E	L	H	V	E	E	L	G	D	H	F	C	S	R	I	E	P	G	.	.	.	.	R	M	E	I	Y	N	I	W	G	D	G	S	K	R	T	Y	R	G	P	G	V	S	P	R	D	A	N	T	S	H	R
Template Known Secondary structure							S	S		T	T	T					T	T												T	T						S								T	T	.	.	.	.							T	T		S		S							T	T	S		S	S
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600					.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	N	L	D	G	I	F	V	Q	I	G	L	L	P	N	T	S	W	L	N	D	A	V	E	L	N	E	R	G	E	I	V	I	D	R	N	N	N	T	N	V	P	G	I	F	A	A	G	D	V	T	D	Q	K	N	K	Q	I	I	I	S	M	G	A	G	A	N	A	A	L	N	A	F	D	Y	I	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.																								.	.
Template Conservation																										.	.	.	.	.	.	.																								.	.
Template Sequence		W	I	E	F	D	S	L	V	L	V	T	G	R	H	S	E	C	T	L	W	N	E	L	K	.	.	.	.	.	.	.	A	R	E	S	E	W	A	E	N	D	I	K	G	I	Y	L	I	G	D	A	E	A	P	.	.	R	L	I	A	D	A	T	F	T	G	H	R	V	A	R	E	I	E	E	A	N	P
Template Known Secondary structure						S						S														.	.	.	.	.	.	.		T	G	G	G	T	G	G	G	T								G	G	G	T	S		.	.																T	T	T	S	S		T
Template Predicted Secondary structure																										.	.	.	.	.	.	.																								.	.
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.								.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.			.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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