Phyre 2 alignment of P60393 with c3l4bG

Job Description P60393
Confidence 91.53% Date Tue Jul 17 17:05:11 BST 2012

Rank 355 Aligned Residues 68

% Identity 24% Template c3l4bG_

PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima

Resolution 3.45 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence	L	G	G	A	G	H	A	L	Y	L	L	N	Q	L	N	D	D	G	.	R	L	I	A	I	D	Q	D	Q	T	A	I	D	N	A	K	E	V	L	K	D	H	L	H	K	V	T	F	V	H	S	N	F	R	E	L	T	Q	I	L	K	D	L	N	I	E	K	V	D	G	I	Y	Y	D	L	G
Query Conservation																			.
Alig confidence																			.																			.	.	.	.	.													.
Template Conservation																																						.	.	.	.	.													.
Template Sequence	I	G	G	E	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	.	.	.	.	.	L	K	A	T	I	I	H	G	D	G	S	H	.	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L	T	P
Template Known Secondary structure																	T	T								S												.	.	.	.	.	S	S	S					S		T	T	S	.								T			T	T								S
Template Predicted Secondary structure																																						.	.	.	.	.													.
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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