Return to main results Retrieve Phyre Job Id

Job DescriptionP60393
Confidence99.54%DateTue Jul 17 17:05:11 BST 2012
Rank11Aligned Residues141
% Identity24%Templatec3a4tA_
PDB info PDB header:transferaseChain: A: PDB Molecule:putative methyltransferase mj0026; PDBTitle: crystal structure of atrm4 from m.jannaschii with sinefungin
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60......... 70.........80.........90
Predicted Secondary structure 



















.





Query SS confidence 

























































.




















Query Sequence  TIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKDHL. HKVTFVHSNFRELTQILKDLN
Query Conservation 

  
       


 
 
 



  

  
 
 
 




 

 

  

  
    . 

  
   
  
   
    
Alig confidence 

























































.




















Template Conservation      
    
  


 


 
 

  
         
 
 
    
   
       
                      
Template Sequence  PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE
Template Known Secondary structure 


TT
SS
TT
TTT
SS
TT

SS
TT
Template Predicted Secondary structure 


































Template SS confidence 















































































   75....80.........90.........100.........110.........120.........130.........140.........150....
 
   91........100.........110.........120.........130.........140.........150.........160.........170
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  IEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAH
Query Conservation 
  











 


   




   







     

   

      
  

  



  
  

  

  
Alig confidence  .


















............................................................
Template Conservation  .   
 

 
 


      ............................................................
Template Sequence  . IFFDKILLDAPCSGNISEE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .



GGG

............................................................
Template Predicted Secondary structure  .














............................................................
Template SS confidence 















































































   155....160.........170...
 
   171........180.........190.........200.........210.........220.........230........ .240........
Predicted Secondary structure 


















..

Query SS confidence 



































































. .









Query Sequence  REQQPITTTLELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRIS. . VITFHSLEDR
Query Conservation 
    
 

  
   
    
          


 





 

 

  
   
      
  



 ..









Alig confidence  .........................................


























..









Template Conservation  .........................................        
  

  
   




 






   



Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENE
Template Known Secondary structure  .........................................S


GGGT
Template Predicted Secondary structure  .........................................













Template SS confidence 















































































   182.......190.........200.........210.........220
 
   249250....
Predicted Secondary structure 
Query SS confidence 





Query Sequence  LCKQVF
Query Conservation 


  
Alig confidence 





Template Conservation   

   
Template Sequence  EVIKYI
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   221.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions