Job Description P60393 Confidence 98.37% Date Tue Jul 17 17:05:11 BST 2012 Rank 216 Aligned Residues 89 % Identity 15% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		M	F	H	H	I	S	V	M	L	N	E	T	I	D	Y	L	N	V	K	E	N	G	V	Y	I	D	C	T	L	G	G	A	G	H	A	L	Y	L	L	N	Q	L	N	D	D	G	R	L	I	A	I	D	Q	D	Q	T	A	I	D	N	A	K	E	V	L	K	D	H	L	.	.	.	.	.	H	K	V	T	F	V
Query Conservation																																																																							.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																									.																													.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																									.
Template Sequence		X	I	T	H	L	P	L	C	.	.	.	.	.	.	.	.	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	.	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V
Template Known Secondary structure				T					T	.	.	.	.	.	.	.	.	T	S	S	S								S		S	S	S							T	T	.		T	T																						T	T	T	G	G	G	T	T		T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																									.
Template SS confidence
		109	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	N	F	R	E	L	T	Q	I	L	K	D	L	N	I	E	K	V	D	G	I	Y	Y	D	L
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		I	G	D	G	V	A	.	.	.	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S
Template Known Secondary structure			S					.	.	.				S	S		S	S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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