Return to main results Retrieve Phyre Job Id

Job DescriptionP0A0H0
Confidence100.00%DateTue Jul 17 17:05:06 BST 2012
Rank3Aligned Residues118
% Identity69%Templated2uubl1
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution2.9

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  PTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIP
Query Conservation   
 


 
  
  
  
 
    

      
   
 
 

 




      






 

 




 


 
 
 

Alig confidence 





















.............












































Template Conservation 





 
        
 
   .............
   

 




 
    






 

 








 
 



Template Sequence  PTINQLVRKGREKVRKKSKVPA. . . . . . . . . . . . . LKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIP
Template Known Secondary structure 










S


.............TTT
S



TT

S
TTS


Template Predicted Secondary structure 















.............






















Template SS confidence 















































































   5....10.........20...... ...30.........40.........50.........60.........70.
 
   82.......90.........100.........110.........120.........130..
Predicted Secondary structure 
































Query SS confidence 


















































Query Sequence  GIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGT
Query Conservation 
 






  






  





 
 


  
   
  

  




 
Alig confidence 


















































Template Conservation 









 






  











  
   
  
   





Template Sequence  GEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT
Template Known Secondary structure  SS




TT





TTSTT

B
TTSTT



TT

SSTTTTT
Template Predicted Secondary structure 


































Template SS confidence 


















































   72.......80.........90.........100.........110.........120..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions