Job Description P0A0J0 Confidence 99.77% Date Tue Jul 17 17:05:06 BST 2012 Rank 12 Aligned Residues 99 % Identity 59% Template d1smyf2 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain Resolution 2.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	I	G	E	E	D	D	S	H	L	G	D	F	I	E	D	Q	E	A	Q	S	P	S	D	H	A	A	Y	E	L	L	K	E	Q	L	E	D	V	L	D	T	L	T	D	R	E	E	N	V	L	R	L	R	F	G	L	D	D	G	R	T	R	T	L	E	E	V	G	K	V	F	G	V	T	R	E	R	I	R
Query Conservation
Alig confidence																																																									.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		T	P	I	G	D	E	K	D	S	F	Y	G	D	F	I	P	D	E	H	L	P	S	P	V	D	A	A	T	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	.	.	.	.	.	G	L	I	D	G	E	E	V	G	A	F	F	G	V	T	R	E	R	I	R
Template Known Secondary structure			B		T	T	T	S	S		B	G	G	G	G	S			S	S	S			T																		T	T	S													.	.	.	.	.		T	T					T	T	T	S	S	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		Q	I	E	A	K	A	L	R	K	L	R	H	.	P	S	R	S	K	R	L	K	D	F	M	D
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		Q	I	E	N	K	A	L	R	K	L	K	Y	H	E	S	R	T	R	K	L	R	D	F	L	D
Template Known Secondary structure																		T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions