Job Description P0A0J0 Confidence 100.00% Date Tue Jul 17 17:05:06 BST 2012 Rank 8 Aligned Residues 176 % Identity 34% Template d1siga_ SCOP info Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Resolution 2.60

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	K	Q	T	I	D	P	T	L	T	L	E	D	V	K	K	Q	L	I	E	K	G	K	K	E	G	H	L	S	H	E	E	I	A	E	K	L	Q	N	F	D	I	D	S	D	Q	M	D	D	F	F	D	Q	L	N	D	N	D	I	S	L	V	N	E	K	D	S	S	D	T	D	E	K	L	N	P	S	D
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	V	N	S	M	R	V	M	M	D	R	V	R	T	Q	E	R	L	I	M	K	L	C	V	E	Q	C	K	M	P	K	K	N	F	I	T	L	F	T	G	N	E	T	S	D	T	W	F	N	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	N	K	P	W	S
Template Known Secondary structure																											T	T	S												T	T	T		S	S	G	G	G	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320																					.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		L	S	A	P	P	G	V	K	I	N	D	P	V	R	M	Y	L	K	E	I	G	R	V	N	L	L	S	A	Q	E	E	I	E	L	A	K	R	I	E	Q	G	D	E	.	.	.	V	A	K	S	R	L	A	E	A	N	L	R	L	V	V	S	I	A	K	R	Y	V	G	R	G	M	L	F	L	D	L	I	Q	E
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.
Template Conservation
Template Sequence		E	K	L	H	D	V	S	E	E	V	H	R	A	L	Q	K	L	Q	Q	I	E	E	E	T	G	L	T	I	E	Q	V	K	D	I	N	R	R	M	S	I	G	E	A	K	A	R	R	A	K	K	E	M	V	E	A	N	L	R	L	V	I	S	I	A	K	K	Y	T	N	R	G	L	Q	F	L	D	L	I	Q	E
Template Known Secondary structure				G	G	G	T																			T	S																														T									T	T	S	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	M	G	L	I	K	A	V	E	K	F	D	F	N	K	G	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	A	I	A	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	I	G	L	M	K	A	V	D	K	F	E	Y	R	R	G	Y	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	S	I	A	D	Q
Template Known Secondary structure															G	G	G
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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