Job Description P0A0J0 Confidence 99.79% Date Tue Jul 17 17:05:06 BST 2012 Rank 11 Aligned Residues 78 % Identity 26% Template d1rp3a3 SCOP info Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Resolution 2.30

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Show / Hide Conservation and Alignment quality

		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		G	D	E	V	A	K	S	R	L	A	E	A	N	L	R	L	V	V	S	I	A	K	R	Y	V	G	R	.	.	.	G	M	L	F	L	D	L	I	Q	E	G	N	M	G	L	I	K	A	V	E	K	F	D	F	N	K	G	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	A	I	A	D	Q	A
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		S	N	Q	I	E	R	E	E	L	I	L	K	Y	L	P	L	V	K	A	I	A	T	N	I	K	K	H	L	P	E	D	V	D	I	R	D	L	I	S	Y	G	V	I	G	L	I	K	A	V	D	N	L	S	T	E	N	P	K	R	A	E	A	Y	I	K	L	R	I	K	G	A	I	Y	D	Y	L	R	S	L	D
Template Known Secondary structure																											T	T	S		T	T	S																			T						T																					T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		204
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		86

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions