Job Description P0A0J0 Confidence 98.87% Date Tue Jul 17 17:05:06 BST 2012 Rank 26 Aligned Residues 89 % Identity 24% Template d1or7a2 SCOP info Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	E	L	A	K	R	I	E	Q	G	D	E	V	A	K	S	R	L	A	E	A	N	L	R	L	V	V	S	I	A	K	R	Y	V	G	R	G	M	L	F	L	D	L	I	Q	E	G	N	M	G	L	I	K	A	V	E	K	F	D	F	N	K	G	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I
Query Conservation
Alig confidence																																									.																							.	.
Template Conservation																																									.																							.	.
Template Sequence		T	D	Q	V	L	V	E	R	V	Q	K	G	D	Q	K	A	F	N	L	L	V	V	R	Y	Q	H	K	V	A	S	L	V	S	R	Y	V	P	S	G	.	D	V	P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	.	.	D	S	A	F	Y	T	W	L	Y	R	I	A	V	N	T	A
Template Known Secondary structure												T	T																					T	T	T	S		G	G	.	G																G	G	G			S	.	.	S	S
Template Predicted Secondary structure																																									.																							.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		196	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	A	I	A	D	Q	A	R	T	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	Y	L	V	A	Q	G	R	R	P	P
Template Known Secondary structure									T	T			T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions