Job Description P0A0J0 Confidence 29.82% Date Tue Jul 17 17:05:06 BST 2012 Rank 403 Aligned Residues 51 % Identity 10% Template c2vi6F_ PDB info PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain Resolution 2.6 Å

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		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		T	L	T	D	R	E	E	N	V	L	R	L	R	F	G	L	D	D	G	.	R	T	R	T	L	E	E	V	G	K	V	F	G	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L	R	H
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		V	F	S	Q	A	Q	L	C	A	L	K	D	R	F	Q	K	Q	K	Y	L	S	L	Q	Q	M	Q	E	L	S	S	I	L	N	L	S	Y	K	Q	V	K	T	W	F	Q	N	Q	R	M	K	C	K	R
Template Known Secondary structure																			S															T																T		G	G
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions