Job Description P0A0J0 Confidence 98.41% Date Tue Jul 17 17:05:06 BST 2012 Rank 34 Aligned Residues 84 % Identity 19% Template c2o7gA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the pribnow box recognition region of sigc from2 mycobacterium tuberculosis Resolution 2.70 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	E	E	I	E	L	A	K	R	I	E	Q	G	D	E	V	A	K	S	R	L	A	E	A	N	L	R	L	V	V	S	I	A	K	R	Y	V	G	R	G	M	L	F	L	D	L	I	Q	E	G	N	M	G	L	I	K	A	V	E	K	F	D	F	N	K	G	F	K	F	S	T	Y	A	T	W	W	I	R	Q
Query Conservation
Alig confidence																																										.																								.	.
Template Conservation																																										.																								.	.
Template Sequence		D	E	A	V	T	A	L	A	L	S	A	A	K	G	N	G	R	A	L	E	A	F	I	K	A	T	Q	Q	D	V	W	R	F	V	A	Y	L	S	D	V	.	G	S	A	D	D	L	T	Q	E	T	F	L	R	A	I	G	A	I	P	R	F	S	A	.	.	R	S	S	A	R	T	W	L	L	A	I	A	R	H
Template Known Secondary structure														T	T																								S			.																		G	G	G				.	.	S	S
Template Predicted Secondary structure																																										.																								.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.
		194	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	R	A	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	A	D	H	I	R
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions