Job Description P0A0J0 Confidence 100.00% Date Tue Jul 17 17:05:06 BST 2012 Rank 1 Aligned Residues 270 % Identity 67% Template c2a6eF_ PDB info PDB header:transferase Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme Resolution 2.80 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	N	D	P	V	R	M	Y	L	K	E	I	G	R	V	N	L	L	S	A	Q	E	E	I	E	L	A	K	R	I	E	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	S	D	P	V	R	Q	Y	L	H	E	I	G	Q	V	P	L	L	T	L	E	E	E	V	E	L	A	R	K	V	E	E	G	M	E	A	I	K	K	L	S	E	I	T	G	L	D	P	D	L	I	R	E	V	V	R	A	K	I	L	G	S	A	R	V	R	H	I	P	G	L	K	E	T	L	D	P	K	T
Template Known Secondary structure		T	T																		T	T																																																T	T	S		S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
																										128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	V	A	K	S	R	L	A	E	A	N	L	R	L	V	V	S	I	A	K	R	Y	V	G	R	G	M	L	F	L	D	L	I	Q	E	G	N	M	G	L	I	K	A	V	E	K	F	D	F	N	K	G	F	K	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	E	I	D	Q	K	L	K	S	L	P	K	E	H	K	R	Y	L	H	I	A	R	E	G	E	A	A	R	Q	H	L	I	E	A	N	L	R	L	V	V	S	I	A	K	K	Y	T	G	R	G	L	S	F	L	D	L	I	Q	E	G	N	Q	G	L	I	R	A	V	E	K	F	E	Y	K	R	R	F	K	F
Template Known Secondary structure												S																									T									T	T	S		T	T	T	S																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	A	I	A	D	Q	A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	K	L	I	R	V	Q	R	Q	L	L	Q	D	L	G	R	D	P	A	P	E	E	I	G	E	E	M	D	L	P	A	E	K	V	R	E	I	L	.	.	K	I	A	Q	E	P	V
Query Conservation																																																																									.	.
Alig confidence																																																																									.	.
Template Conservation
Template Sequence		S	T	Y	A	T	W	W	I	R	Q	A	I	N	R	A	I	A	D	Q	A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	K	L	S	R	T	A	R	Q	L	Q	Q	E	L	G	R	E	P	T	Y	E	E	I	A	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T	L	K	I	A	Q	E	P	V
Template Known Secondary structure																					S	S	S	S																									S	S				T	T								T	T														S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	E	T	P	I	G	E	E	D	D	S	H	L	G	D	F	I	E	D	Q	E	A	Q	S	P	S	D	H	A	A	Y	E	L	L	K	E	Q	L	E	D	V	L	D	T	L	T	D	R	E	E	N	V	L	R	L	R	F	G	L	D	D	G	R	T	R	T	L	E	E	V	G	K	V	F	G	V	T	R	E
Query Conservation
Alig confidence																																																															.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence		S	L	E	T	P	I	G	D	E	K	D	S	F	Y	G	D	F	I	P	D	E	H	L	P	S	P	V	D	A	A	T	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	.	.	.	.	.	D	G	E	E	V	G	A	F	F	G	V	T	R	E
Template Known Secondary structure			S	S		B		S	S	T	T	S		B	G	G	G	S				S	S	S			T																			S	S		T	T											T	T	.	.	.	.	.								S	S	S	S
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.						.	.	.	380	.	.	.	.	.	.	.	.	.	390
		342	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		R	I	R	Q	I	E	A	K	A	L	R	K	L	R	.	H	P	S	R	S	K	R	L	K	D	F	M	D
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		R	I	R	Q	I	E	N	K	A	L	R	K	L	K	Y	H	E	S	R	T	R	K	L	R	D	F	L	D
Template Known Secondary structure																					T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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