Job Description P0A0J0 Confidence 100.00% Date Tue Jul 17 17:05:06 BST 2012 Rank 7 Aligned Residues 219 % Identity 26% Template c1rp3G_ PDB info PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm Resolution 2.30 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		Q	G	D	E	V	A	K	S	R	L	A	E	A	N	L	R	L	V	V	S	I	A	K	R	Y	V	G	R	.	.	.	G	M	L	F	L	D	L	I	Q	E	G	N	M	G	L	I	K	A	V	E	K	F	D	F	N	K	G	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	T	R	A	I	A	D	Q
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		Y	S	N	Q	I	E	R	E	E	L	I	L	K	Y	L	P	L	V	K	A	I	A	T	N	I	K	K	H	L	P	E	D	V	D	I	R	D	L	I	S	Y	G	V	I	G	L	I	K	A	V	D	N	L	S	T	E	N	P	K	R	A	E	A	Y	I	K	L	R	I	K	G	A	I	Y	D	Y	L	R	S	L
Template Known Secondary structure															T													T	T	S		T	T	S																			T																											T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	K	L	I	R	V	Q	R	Q	L	L	Q	D	L	G	R	D	P	A	P	E	E	I	G	E	E	M	D	L	P	A	E	K	V	R	E	I	L	K	I	A	Q	E	P	V	S	L	E	T	P	I	G	E	E	D	D	S	H	L	G	D	F	I	E	D	Q
Query Conservation
Alig confidence				.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	.	.	.	G	S	R	Q	V	R	E	K	E	R	R	I	K	E	V	V	E	K	L	K	E	K	L	G	R	E	P	T	D	E	E	V	A	K	E	L	G	I	S	T	E	E	L	F	K	T	L	D	K	I	.	.	.	.	.	.	.	.	.	.	.	N	F	S	Y	I	L	S	L	E	E	V	F	R	D
Template Known Secondary structure		S	T	.	.	.	T																							S	S												T	S													.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.												.	.	.	140	.	.	.	.	.	.	.	.	.	150
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Q	S	P	S	D	H	A	A	Y	E	L	L	K	E	Q	L	E	D	V	L	D	T	L	T	D	R	E	E	N	V	L	R	L	R	F	G	L	D	D	G	R	T	R	T	L	E	E	V	G	K	V	F	G	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L	R	H	P	S	R	S	K	R
Query Conservation
Alig confidence																																							.	.	.	.																																	.	.	.	.	.
Template Conservation																																							.	.	.	.																																	.	.	.	.	.
Template Sequence		F	A	R	D	Y	S	E	E	V	I	K	R	E	L	T	E	K	V	K	E	A	V	S	K	L	P	E	R	E	K	L	V	I	Q	L	I	F	.	.	.	.	Y	E	E	L	P	A	K	E	V	A	K	I	L	E	T	S	V	S	R	V	S	Q	L	K	A	K	A	L	E	R	L	R	.	.	.	.	.	E	M
Template Known Secondary structure																									T	S													.	.	.	.	T	S												T	S																		.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.																																	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.
		363	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	D	F	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	N	P	L
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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