Job Description P0A0J0 Confidence 41.61% Date Tue Jul 17 17:05:06 BST 2012 Rank 358 Aligned Residues 127 % Identity 15% Template c1aisB_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:protein (transcription initiation factor iib); PDBTitle: tata-binding protein/transcription factor (ii)b/tata-box2 complex from pyrococcus woesei Resolution 2.10 Å

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		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	L	G	R	D	P	A	P	E	E	I	G	E	E	M	D	L	P	A	E	K	V	R	E	I	L	K	I	A	Q	E	P	V	S	L	E	T	P	I	G	E	E	D	D	S	H	L	G	D	F	I	E	D	Q	E	A	Q	S	P	S	D	H	A	A	Y	E	L	L	K	E	Q	L	E	D	V	L	D	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	L	K	V	P	R	T	L	D	E	I	A	D	I	A	R	V	D	K	K	E	I	G	R	S	Y	R	F	I	A	R	N	L	N	L	T	P	K	K	L	F	V	K	P	T	D	Y	V	N	K	F	A	D	E	L	G	L	S	E	K	V	R	R	R	A	I	E	I	L	D	E	A	Y	K	R	G	L	T	S
Template Known Secondary structure					T												T	T	S																T	T			T	T	T	T				G	G	G	G									T																			T	T			T
Template Predicted Secondary structure
Template SS confidence
		1164	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		T	D	R	E	E	N	V	L	R	L	R	F	G	L	.	.	.	D	D	G	R	T	R	T	L	E	E	V	G	K	V	F	G	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		G	K	S	P	A	G	L	V	A	A	A	L	Y	I	A	S	L	L	E	G	E	K	R	T	Q	R	E	V	A	E	V	A	R	V	T	E	V	T	V	R	N	R	Y	K	E	L	V	E	K	L
Template Known Secondary structure		T	S																	T	T													T
Template Predicted Secondary structure
Template SS confidence
		1244	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions