Job Description P60430 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 5 Aligned Residues 237 % Identity 36% Template c4a1cA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:rpl8; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Resolution 3.52 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		L	P	K	K	A	G	R	N	N	Q	G	K	L	T	V	R	H	H	G	G	G	H	K	R	Q	Y	R	V	I	D	F	K	R	N	K	D	G	I	N	A	K	V	D	S	I	Q	Y	D	P	N	R	S	A	N	I	A	L	V	V	Y	A	D	.	.	.	.	.	G	E	K	R	Y	I	I	A	P	K	G	L	E
Query Conservation																																																																.	.	.	.	.
Alig confidence											.																																																					.	.	.	.	.
Template Conservation											.
Template Sequence		R	A	Q	R	K	G	R	A	N	.	G	V	Y	K	S	H	K	S	G	R	I	A	P	A	Q	Y	R	V	Y	D	F	A	E	R	Q	G	Y	I	R	G	C	I	R	D	I	V	H	E	P	G	R	G	A	P	L	A	E	V	A	F	R	D	P	Y	R	Y	K	T	N	K	E	H	F	I	A	A	E	G	Q	Y
Template Known Secondary structure						T	T		S	S	.	S	S						T	T																	S													T	T		S	S										T	T	S	S										B	T	T
Template Predicted Secondary structure											.
Template SS confidence
		6	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		V	G	Q	I	V	E	S	G	A	E	A	D	I	K	V	G	N	A	L	P	L	Q	N	I	P	V	G	T	V	V	H	N	I	E	L	K	P	G	K	G	G	Q	I	A	R	S	A	G	A	S	A	Q	V	L	.	.	G	K	E	G	K	Y	V	L	I	R	L	R	S	G	E	V	R	M	I	L	S	T	C	R
Query Conservation																																																								.	.
Alig confidence																																																								.	.
Template Conservation
Template Sequence		S	G	Q	Y	V	Y	C	G	L	K	A	Q	I	A	V	G	N	V	L	P	I	N	R	I	P	E	G	T	V	V	C	N	V	E	E	K	V	G	D	R	G	T	F	S	R	A	S	G	C	Y	A	T	I	I	G	H	S	E	D	G	D	K	T	R	I	R	L	P	S	G	A	R	K	T	I	P	G	S	C	R
Template Known Secondary structure		T	T							S	S					T	T					G	G	G	S		T	T					S	B		S	S	T	T		S			B			S	T	T										S	S	S	S							T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		A	T	I	G	Q	V	G	N	L	Q	H	E	L	V	N	V	G	K	A	G	R	S	.	.	.	.	.	R	W	K	G	I	R	P	T	V	R	G	S	V	M	N	P	N	D	H	P	H	G	G	G	E	G	R	A	P	I	G	R	P	S	P	M	S	P	W	G	K	P	T	L	G	K	K	T	R	R	G	K	K
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																												.
Template Conservation																																																								.
Template Sequence		A	T	V	G	I	V	A	G	G	G	R	T	D	K	P	I	L	K	A	G	N	Q	F	H	K	Y	A	R	K	R	K	S	W	P	R	V	R	G	V	A	M	N	P	V	D	H	P	H	G	G	G	N	H	Q	.	H	I	G	H	P	A	T	V	S	K	W	A	S	A	G	Q	K	V	G	L	R	A	A	R	R
Template Known Secondary structure					S		B	S	S	T	T	G	G	G	S														T	S	S				S				T	T	T	S		T	T	T		S	S			S	S	S		.				S		S				T	T			G	G	G			S			S		S
Template Predicted Secondary structure																																																								.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	D	K	L	I	V	R	G	R	K	K
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	G	L	V	R	G	G	Q	K	E	K
Template Known Secondary structure		.		S				S		T
Template Predicted Secondary structure		.
Template SS confidence
			244	.	.	.	.	.	250	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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