Job Description P60430 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 1 Aligned Residues 269 % Identity 65% Template c3d5bD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. Resolution 3.21 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		A	I	K	K	Y	K	P	I	T	N	G	R	R	N	M	T	S	L	D	F	A	E	I	T	K	T	T	P	E	K	S	L	L	K	P	L	P	K	K	A	G	R	N	N	Q	G	K	L	T	V	R	H	H	G	G	G	H	K	R	Q	Y	R	V	I	D	F	K	R	.	N	K	D	G	I	N	A	K	V	D	S
Query Conservation																																																																						.
Alig confidence																																																																						.
Template Conservation
Template Sequence		A	V	K	K	F	K	P	Y	T	P	S	R	R	F	M	T	V	A	D	F	S	E	I	T	K	T	E	P	E	K	S	L	V	K	P	L	K	K	T	G	G	R	N	N	Q	G	R	I	T	V	R	F	R	G	G	G	H	K	R	L	Y	R	I	I	D	F	K	R	W	D	K	V	G	I	P	A	K	V	A	A
Template Known Secondary structure									S	S	S	S	S	S	S						G	G	G	S		S			S				S	S	S							S	S		S	S	S	S		S	S	S	S	B													S	S	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	Y	D	P	N	R	S	A	N	I	A	L	V	V	Y	A	D	G	E	K	R	Y	I	I	A	P	K	G	L	E	V	G	Q	I	V	E	S	G	A	E	A	D	I	K	V	G	N	A	L	P	L	Q	N	I	P	V	G	T	V	V	H	N	I	E	L	K	P	G	K	G	G	Q	I	A	R	S	A	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	Y	D	P	N	R	S	A	R	I	A	L	L	H	Y	V	D	G	E	K	R	Y	I	I	A	P	D	G	L	Q	V	G	Q	Q	V	V	A	G	P	D	A	P	I	Q	V	G	N	A	L	P	L	R	F	I	P	V	G	T	V	V	H	A	V	E	L	E	P	K	K	G	A	K	L	A	R	A	A	G	T
Template Known Secondary structure						T	T	S	S	S								T	T	T										T			T	T					B	S	T	T	S				T	T					G	G	G	S		T	T								S	S	T	T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	Q	V	L	G	K	E	G	K	Y	V	L	I	R	L	R	S	G	E	V	R	M	I	L	S	T	C	R	A	T	I	G	Q	V	G	N	L	Q	H	E	L	V	N	V	G	K	A	G	R	S	R	W	K	G	I	R	P	T	V	R	G	S	V	M	N	P	N	D	H	P	H	G	G	G	E	G	R	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	Q	I	Q	G	R	E	G	D	Y	V	I	L	R	L	P	S	G	E	L	R	K	V	H	G	E	C	Y	A	T	V	G	A	V	G	N	A	D	H	K	N	I	V	L	G	K	A	G	R	S	R	W	L	G	R	R	P	H	V	R	G	A	A	M	N	P	V	D	H	P	H	G	G	G	E	G	R	A	P
Template Known Secondary structure										T	T							T	T	S							T	T						S			S			G	G	G	G					S	T						T	T	B						S	T	T	S		G	G	G		S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	R	P	S	P	M	S	P	W	G	K	P	T	L	G	K	K	T	R	R	G	K	K	S	S	D	K	L	I	V
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		R	G	R	P	P	.	A	S	P	W	G	W	Q	T	K	G	L	K	T	R	K	R	R	K	P	S	S	R	F	I	I
Template Known Secondary structure			S	S	S		.	B		T	T	S		B		S	S				S		T	T		G	G	G	G	S
Template Predicted Secondary structure							.
Template SS confidence
		242	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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