Job Description P60430 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 6 Aligned Residues 226 % Identity 36% Template c2zkra_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map Resolution 8.70 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		K	P	L	P	K	K	A	G	R	N	N	Q	G	K	L	T	V	R	H	H	G	G	G	H	K	R	Q	Y	R	V	I	D	F	K	R	N	K	D	G	I	N	A	K	V	D	S	I	Q	Y	D	P	N	R	S	A	N	I	A	L	V	V	Y	A	D	G	E	K	.	.	.	.	.	R	Y	I	I	A	P	K	G
Query Conservation																																																																					.	.	.	.	.
Alig confidence																											.	.																																									.	.	.	.	.
Template Conservation																											.	.
Template Sequence		V	I	R	G	Q	R	K	G	A	G	S	V	F	R	A	H	V	K	H	R	K	G	A	A	R	.	.	L	R	A	V	D	F	A	E	R	H	G	Y	I	K	G	I	V	K	D	I	I	H	D	P	G	R	G	A	P	L	A	K	V	V	F	R	D	P	Y	R	F	K	K	R	T	E	L	F	I	A	A	E	G
Template Known Secondary structure								G	G	G		S	T	T	S			G	G	G							.	.						T	T	T		T	T													T	T	T	T									S	S			S	S	S	S	S							B	S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		L	E	V	G	Q	I	V	E	S	G	A	E	A	D	I	K	V	G	N	A	L	P	L	Q	N	I	P	V	G	T	V	V	H	N	I	E	L	K	P	G	K	G	G	Q	I	A	R	S	A	G	A	S	A	Q	V	L	G	K	.	.	E	G	K	Y	V	L	I	R	L	R	S	G	E	V	R	M	I	L	S	T
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		I	H	T	G	Q	F	V	Y	C	G	K	K	A	Q	L	N	I	G	N	V	L	P	V	G	T	M	P	E	G	T	I	V	C	C	L	E	E	K	P	G	D	R	G	K	L	A	R	A	S	G	N	Y	A	T	V	I	S	H	N	P	E	T	K	K	T	R	V	K	L	P	S	G	S	K	K	V	I	S	S	A
Template Known Secondary structure				T	T						S	T	T			S		T	T					G	G	G	S		T	T					S	B		S	S	T	T	S				B	S		S	T	T										S	S	S	S							T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.							.	.	.																																.	.	.
Query SS confidence																										.	.							.	.	.																																.	.	.
Query Sequence		C	R	A	T	I	G	Q	V	G	N	L	Q	H	E	L	V	N	V	G	K	A	G	R	S	.	.	R	W	K	G	I	R	.	.	.	P	T	V	R	G	S	V	M	N	P	N	D	H	P	H	G	G	G	E	G	R	A	P	I	G	R	P	S	P	M	S	.	.	.	P	W	G	K	P	T	L	G	K	K	T
Query Conservation																										.	.							.	.	.																																.	.	.
Alig confidence																										.	.							.	.	.												.															.					.	.	.
Template Conservation																																																.															.
Template Sequence		N	R	A	V	V	G	V	V	A	G	G	G	R	I	D	K	P	I	L	K	A	G	R	A	Y	H	K	Y	K	A	K	R	N	C	W	P	R	V	R	G	V	A	M	N	P	V	.	H	P	F	G	G	G	N	H	Q	H	I	G	K	P	.	S	T	I	R	R	D	A	P	A	G	R	K	V	G	L	I	A	A
Template Known Secondary structure							S		B	S		T	T	T	T	T	S				S										T	S	S				S				G	G	G	S				.		T	T			S	S	S				S	S		.			B		T	T			G	G	G			S	S	B	T
Template Predicted Secondary structure																																																.															.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	G	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	T	G	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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