Job Description P60430 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 7 Aligned Residues 217 % Identity 39% Template c1kqsA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis Resolution 3.10 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		G	K	L	T	V	R	H	H	G	G	G	H	K	R	Q	Y	R	V	I	D	F	K	R	N	.	K	D	G	I	N	A	K	V	D	S	I	Q	Y	D	P	N	R	S	A	N	I	A	L	V	V	Y	A	D	G	E	K	R	Y	I	I	A	P	K	G	L	E	V	G	Q	I	V	E	S	G	A	E	A	D	I	K
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		G	R	G	T	S	T	F	R	A	P	S	H	R	Y	K	A	D	L	E	H	R	K	V	E	D	G	D	V	I	A	G	T	V	V	D	I	E	H	D	P	A	R	S	A	P	V	A	A	V	E	F	E	D	G	D	R	R	L	I	L	A	P	E	G	V	G	V	G	D	E	L	Q	V	G	V	D	A	E	I	A
Template Known Secondary structure			T			G	G	G	S			G	G	G												S	S	S													T	T	T	T									T	T	S								B	T	T			T	T					B	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	N	A	L	P	L	Q	N	I	P	V	G	T	V	V	H	N	I	E	L	K	P	G	K	G	G	Q	I	A	R	S	A	G	A	S	A	Q	V	L	G	K	E	G	K	Y	V	L	I	R	L	R	S	G	E	V	R	M	I	L	S	T	C	R	A	T	I	G	Q	V	G	N	L	Q	H	E	L	V	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	N	T	L	P	L	A	E	I	P	E	G	V	P	V	C	N	V	E	S	S	P	G	D	G	G	K	F	A	R	A	S	G	V	N	A	Q	L	L	T	H	D	R	N	V	A	V	V	K	L	P	S	G	E	M	K	R	L	D	P	Q	C	R	A	T	I	G	V	V	G	G	G	G	R	T	D	K	P	F
Template Known Secondary structure		T	T					G	G	G	S		T	T					S	B		S	S	T	T	S				B	S		S	T	T										S	S							T	T	S							T	T						S		B	S	S	T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																		.	.	.
Query SS confidence														.	.	.	.	.																																		.	.	.
Query Sequence		G	K	A	G	R	S	R	W	K	G	I	R	.	.	.	.	.	P	T	V	R	G	S	V	M	N	P	N	D	H	P	H	G	G	G	E	G	R	A	P	I	G	R	P	S	P	M	S	P	W	.	.	.	G	K	P	T	L	G	K	K	T	R	R	G	K	K
Query Conservation														.	.	.	.	.																																		.	.	.
Alig confidence														.	.	.	.	.																				.														.	.	.
Template Conservation																																						.
Template Sequence		V	K	A	G	N	K	H	H	K	M	K	A	R	G	T	K	W	P	N	V	R	G	V	A	M	N	A	V	D	H	P	F	G	G	G	G	.	R	Q	H	P	G	K	P	K	S	I	S	R	N	A	P	P	G	R	K	V	G	D	I	A	S	K	R	T	G	R
Template Known Secondary structure			S									T	T	S	S				S				G	G	G	S		T	T	T		T	T			S	S	.	S	S			S	S		S				T	T			T	T	T			S			T		S			S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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