Job Description O05154 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 4 Aligned Residues 235 % Identity 13% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure														.											.	.							.	.																															.
Query SS confidence														.											.	.							.	.																															.
Query Sequence		R	F	T	I	I	I	P	T	C	N	N	E	.	A	T	I	R	Q	L	L	I	S	I	.	.	E	S	K	E	H	Y	.	.	R	I	L	C	I	D	G	G	S	T	D	Q	T	I	P	M	I	E	R	L	Q	R	E	L	K	H	I	S	L	I	.	Q	L	Q	N	A	S	I	A	T	C	I	N	K	G	L	M
Query Conservation														.											.	.							.	.																															.
Alig confidence														.											.	.							.	.																					.	.	.								.
Template Conservation																																																							.	.	.
Template Sequence		A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L	L	G	K	.	.	.	I	E	K	V	R	V	L	R	N	D	R	R	E	G	L	M	R	S	R	V	R	G	A	D
Template Known Secondary structure										S	S																	S		G	G	G										S		S		T					G	G	G	G	.	.	.	B	T	T							S	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	K	M	T	D	P	H	D	S	D	A	F	M	V	I	K	P	T	S	I	V	L	P	G	K	L	D	R	L	T	A	A	F	K	N	N	D	N	I	D	M	V	I	G	Q	R	A	Y	N	Y	H	G	E	W	K	L	K	S	A	D	E	F	I	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																														.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.																														.
Template Sequence		A	A	Q	.	.	.	.	.	.	A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	.	T	R	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A	S	A	D	L	K	G	G	F	D	W	N	L	V	F	K	W	D	Y	M	T
Template Known Secondary structure					.	.	.	.	.	.	S	S							S	S					T	T													T	.	T												T	T	T								S	S							T	T
Template Predicted Secondary structure					.	.	.	.	.	.																														.
Template SS confidence
		214	.	.							.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
							142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.																															.									.	.
Query SS confidence		.	.	.	.	.																															.									.	.
Query Sequence		.	.	.	.	.	N	R	I	V	T	L	T	E	Q	P	D	L	L	S	M	M	S	F	D	G	K	L	F	S	A	K	F	A	E	L	.	Q	C	D	E	T	L	A	N	.	.	T	Y	N	H	A	I	L	V	K	A	M	Q	K	A	T	D	I	H	L	V	S	Q	M	I	V	G	D	N	D	I	D	T	H	A
Query Conservation		.	.	.	.	.																															.									.	.
Alig confidence		.	.	.	.	.																															.									.	.
Template Conservation
Template Sequence		P	E	Q	R	R	S	R	Q	G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V	W	Q	C	G	G	S	L	E	I	I	P	C	S	R	V	G	H	V	F	R	K	Q	H	P
Template Known Secondary structure								T	S	S		T	T	S					S	S			S	S	S											T	T				T	T			S	S	S	S												T	T																	S	S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	N	D	E	D	F	N	R	Y	I	T	E	I	M	K	I	R	Q	R	V	M	E	M	L	L	L	P	E	Q	R	L	L	Y	S	D
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		Y	T	F	P	G	G	S	G	T	V	.	.	.	F	A	R	N	T	R	R	A	A	E	V	W	M	D	E	Y	K	N	F	Y	Y	A	A
Template Known Secondary structure		S			T	T						.	.	.														G	G	G
Template Predicted Secondary structure												.	.	.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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