Job Description O05154 Confidence 100.00% Date Tue Jul 17 17:05:01 BST 2012 Rank 3 Aligned Residues 230 % Identity 15% Template c2d7iA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure														.											.	.							.	.															.																	.
Query SS confidence														.											.	.							.	.															.																	.
Query Sequence		R	F	T	I	I	I	P	T	C	N	N	E	.	A	T	I	R	Q	L	L	I	S	I	.	.	E	S	K	E	H	Y	.	.	R	I	L	C	I	D	G	G	S	T	D	Q	T	I	.	P	M	I	E	R	L	Q	R	E	L	K	H	I	S	L	I	.	Q	L	Q	N	A	S	I	A	T	C	I	N	K	G	L
Query Conservation														.											.	.							.	.															.																	.
Alig confidence														.											.	.							.	.															.																	.
Template Conservation
Template Sequence		N	T	S	I	I	I	P	F	H	N	E	G	W	S	S	L	L	R	T	V	H	S	V	L	N	R	S	P	P	E	L	V	A	E	I	V	L	V	D	D	F	S	D	R	E	H	L	K	K	P	L	E	D	Y	M	A	L	F	P	S	V	R	I	L	R	T	K	K	R	E	G	L	I	R	T	R	M	L	G	A
Template Known Secondary structure										S	S																	S		G	G	G										S				G	G	G	T								T	T	S	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	I	K	M	T	D	P	H	D	S	D	A	F	M	V	I	K	P	T	S	I	V	L	P	G	K	L	D	R	L	T	A	A	F	K	N	N	D	N	I	D	M	V	I	G	Q	R	A	Y	N	Y	H	G	E	W	K	L	K	S	A	D	E	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.																														.
Template Sequence		S	V	A	T	.	.	.	.	.	.	G	D	V	I	T	F	L	D	S	H	C	E	A	N	V	N	W	L	P	P	L	L	D	R	I	A	R	N	R	.	K	T	I	V	C	P	M	I	D	V	I	D	H	D	D	F	R	Y	E	T	Q	A	G	D	A	M	R	G	A	F	D	W	E	M	Y	Y	K	R	I	P
Template Known Secondary structure						.	.	.	.	.	.	S	S							S	S					T	T		S											T	.	T												T	T	T							T	T	S	S							T	T
Template Predicted Secondary structure						.	.	.	.	.	.																														.
Template SS confidence
		226	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.		.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.																													.					.									.	.
Query SS confidence		.																													.					.									.	.
Query Sequence		.	K	D	N	R	I	V	T	L	T	E	Q	P	D	L	L	S	M	M	S	F	D	G	K	L	F	S	A	K	.	F	A	E	L	.	Q	C	D	E	T	L	A	N	.	.	T	Y	N	H	A	I	L	V	K	A	M	Q	K	A	T	D	I	H	L	V	S	Q	M	I	V	G	D	N	D	I	D	T	H	A	T
Query Conservation		.																													.					.									.	.
Alig confidence		.																													.					.									.	.																																		.
Template Conservation																																																																																.
Template Sequence		I	P	P	E	L	Q	K	A	D	P	S	D	P	F	E	S	P	V	M	A	G	G	L	F	A	V	D	R	K	W	F	W	E	L	G	G	Y	D	P	G	L	E	I	W	G	G	E	Q	Y	E	I	S	F	K	V	W	M	C	G	G	R	M	E	D	I	P	C	S	R	V	G	H	I	Y	R	K	Y	V	.	P
Template Known Secondary structure				T	T	T			S	S	T	T	S					S	S			S	S	S											T	T	S	S		T	T			S	S	S	S												T	T																	S	S		.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	D	E	D	F	N	R	Y	I	T	E	I	M	K	I	R	Q	R	V	M	E	M	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	V	P	A	G	V	S	L	A	R	N	L	K	R	V	A	E	V	W	M	D	E	Y	A
Template Known Secondary structure		S				S	S																G	G	G
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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