Job Description O05154 Confidence 99.97% Date Tue Jul 17 17:05:01 BST 2012 Rank 5 Aligned Residues 224 % Identity 17% Template c1xhbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure													.											.	.							.	.															.												.						.
Query SS confidence													.											.	.							.	.															.												.						.
Query Sequence		F	T	I	I	I	P	T	C	N	N	E	.	A	T	I	R	Q	L	L	I	S	I	.	.	E	S	K	E	H	Y	.	.	R	I	L	C	I	D	G	G	S	T	D	Q	T	I	.	P	M	I	E	R	L	Q	R	E	L	K	.	H	I	S	L	I	.	Q	L	Q	N	A	S	I	A	T	C	I	N	K	G	L
Query Conservation													.											.	.							.	.															.												.						.
Alig confidence													.											.	.							.	.															.												.						.
Template Conservation
Template Sequence		T	S	V	V	I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	L	K	V	P	V	H	V	I	R	M	E	Q	R	S	G	L	I	R	A	R	L	K	G	A
Template Known Secondary structure									S	S																S	S		G	G	G										S				G	G	G	T									S	S	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		M	D	I	K	M	T	D	P	H	D	S	D	A	F	M	V	I	K	P	T	S	I	V	L	P	G	K	L	D	R	L	T	A	A	F	K	N	N	D	N	I	D	M	V	I	G	Q	R	A	Y	N	Y	H	G	E	W	K	L	K	S	A	D	E	F	I	K	D	N	R	I	V	T	L	T	E	Q	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence						.	.	.	.	.	.																														.																																					.	.	.	.
Template Conservation						.	.	.	.	.	.																														.
Template Sequence		A	V	S	R	.	.	.	.	.	.	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	D	R	.	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M	A	G	S	D	M	T	Y	G	G	F	N	W	K	L	N	F	R	W	Y	P	V
Template Known Secondary structure						.	.	.	.	.	.	S	S							S	S					T	T													T	.	T												S	S	S								T	T							T	T
Template Predicted Secondary structure						.	.	.	.	.	.																														.
Template SS confidence
		198	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
																151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.		.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	L	L	S	M	M	S	F	D	G	K	L	F	S	A	K	.	F	A	E	L	.	Q	C	D	E	T	L	A	N	.	.	T	Y	N	H	A	I	L	V	K	A	M	Q	K	A	T	D	I	H	L	V	S	Q	M	I	V	G	D	N	D	I	D	T	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.					.									.	.
Template Conservation
Template Sequence		P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	I	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I	S	F	R	I	W	Q	C	G	G	T	L	E	I	V	T	C	S	H	V	G	H	V	F	G	Q	I	I
Template Known Secondary structure									T	T	T		T	T	S					S	B			S	S	S											T	T	S			T	T	S		T	T					S									T	T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	S	N	D	E	D	F	N	R	Y	I	T	E	I	M	K	I	R	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	N	N	R	R	L	A	E	V	W	M	D	E	F	K	N	F	F	Y	I
Template Known Secondary structure														G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions